View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_62 (Length: 397)

Name: NF1715_low_62
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_62
NF1715_low_62
[»] chr4 (9 HSPs)
chr4 (117-386)||(52398458-52398727)
chr4 (20-114)||(52398306-52398400)
chr4 (350-386)||(1791332-1791368)
chr4 (350-386)||(48553907-48553943)
chr4 (343-389)||(10580134-10580179)
chr4 (350-386)||(3296554-3296590)
chr4 (350-386)||(3296987-3297023)
chr4 (350-386)||(7118207-7118243)
chr4 (350-386)||(19310798-19310834)
[»] chr1 (2 HSPs)
chr1 (350-389)||(18180146-18180185)
chr1 (343-386)||(9880662-9880705)
[»] chr7 (5 HSPs)
chr7 (343-389)||(44803498-44803544)
chr7 (350-386)||(5029796-5029832)
chr7 (350-386)||(17075660-17075696)
chr7 (350-386)||(22948921-22948957)
chr7 (350-386)||(32092239-32092275)
[»] scaffold0063 (1 HSPs)
scaffold0063 (350-386)||(35235-35271)
[»] chr6 (2 HSPs)
chr6 (350-386)||(17157876-17157912)
chr6 (350-386)||(211452-211488)
[»] chr2 (9 HSPs)
chr2 (350-386)||(2517424-2517460)
chr2 (343-386)||(3691261-3691304)
chr2 (350-386)||(2191228-2191264)
chr2 (350-386)||(21182318-21182354)
chr2 (350-386)||(21216934-21216970)
chr2 (350-386)||(21217364-21217400)
chr2 (350-386)||(21265002-21265038)
chr2 (350-386)||(21265432-21265468)
chr2 (350-386)||(39729649-39729685)
[»] chr8 (1 HSPs)
chr8 (350-386)||(13315386-13315422)
[»] chr5 (2 HSPs)
chr5 (350-386)||(8750403-8750439)
chr5 (350-386)||(18999683-18999719)
[»] chr3 (1 HSPs)
chr3 (350-386)||(45728360-45728396)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 117 - 386
Target Start/End: Original strand, 52398458 - 52398727
Alignment:
Q  117 tatgaattagggatggctcatcaacttgcgaatcttcagcaatacacaagcataaggatggaagtgatcaaaatcatcctaaatcaacttataaatttaa 216  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52398458 tatgaactagggatggttcatcaacttgcgaatcttcagcaatacacaagcataaggatggaagtgatcaaaatcatcctaaatcaacttataaatttaa 52398557  T
Q  217 aatatttattgaaaaatgatttttagaaagccataaacactttaaacaccttgagttgagaggnnnnnnnngaatgttgtaataaattgatgatatgata 316  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||    
T  52398558 aatatttattgaaaaatgttttttagaaagccataaacactttaaacaccttgagttgtgaggataaaaaagaatgttgtaataaattgatgatatgata 52398657  T
Q  317 gatattaaaaagatagggatatggtcaatatgttttttagtccttacattttgcgtcactttgaagaata 386  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  52398658 gatattaaaaagatagggatatggtcaatatgttttttattccttacattttgcgccactttgaagaata 52398727  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 52398306 - 52398400
Alignment:
Q  20 atgtcgatttttgtgttgtgcctattgttgcgttcatgatagtcagtaattaacttaagaaaaactgatagtcaacaattaacgtaagagaaatt 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  52398306 atgtcgatttttgtgttgtgcctgttgttgcgttcatgatagtcagtaattaacttaagagaaattgatagtcaacaattaacgtaagagaaatt 52398400  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 1791332 - 1791368
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1791332 tttttagtccttacattttgcgtgactttgaagaata 1791368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 48553907 - 48553943
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48553907 tttttagtccttacattttgcgtccctttgaagaata 48553943  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 10580179 - 10580134
Alignment:
Q  343 aatatgttttttagtccttacattttgcgtcactttgaagaataatc 389  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||    
T  10580179 aatatgtttttt-gtccttacattttgagtgactttgaagaataatc 10580134  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 3296554 - 3296590
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  3296554 tttttagtccttacattttgcgcccctttgaagaata 3296590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 3297023 - 3296987
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  3297023 tttttagtccttacattttgcgaccctttgaagaata 3296987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 7118243 - 7118207
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  7118243 tttttagtccttacattttgcgcccctttgaagaata 7118207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 19310798 - 19310834
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  19310798 tttttagtccttacattttgcgcctctttgaagaata 19310834  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 18180185 - 18180146
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaataatc 389  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  18180185 tttttagtccttacattttgcgtgactttgaagaataatc 18180146  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 9880662 - 9880705
Alignment:
Q  343 aatatgttttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  9880662 aatatgttttttggtccctacattttgcgttactttgaagaata 9880705  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 44803544 - 44803498
Alignment:
Q  343 aatatgttttttagtccttacattttgcgtcactttgaagaataatc 389  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||    
T  44803544 aatatgttttttggtccctacattttgcgtgactttgaagaataatc 44803498  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 5029832 - 5029796
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  5029832 tttttagtcgttacattttgcgtctctttgaagaata 5029796  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 17075696 - 17075660
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  17075696 tttttagtccttacattttgcgcctctttgaagaata 17075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 22948957 - 22948921
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  22948957 tttttagtccttacattttgcgaccctttgaagaata 22948921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 32092239 - 32092275
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  32092239 tttttagtccttacattttgcgcctctttgaagaata 32092275  T

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Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 35271 - 35235
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35271 tttttagtccttacattttgcgtccctttgaagaata 35235  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 17157912 - 17157876
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17157912 tttttagtccttacattttgcgccactttgaagaata 17157876  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 211452 - 211488
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  211452 tttttagtccttacattttgcgcccctttgaagaata 211488  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 2517424 - 2517460
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2517424 tttttagtccttacattttgcgtctctttgaagaata 2517460  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 3691261 - 3691304
Alignment:
Q  343 aatatgttttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  3691261 aatatgttttttggtccctacattttgcgtaactttgaagaata 3691304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 2191228 - 2191264
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  2191228 tttttagtccttacattttgcgcccctttgaagaata 2191264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 21182318 - 21182354
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  21182318 tttttagtccttacattttgcgcccctttgaagaata 21182354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 21216934 - 21216970
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  21216934 tttttagtccttacattttgcgcctctttgaagaata 21216970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 21217400 - 21217364
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  21217400 tttttagtccttacattttgcgccgctttgaagaata 21217364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 21265002 - 21265038
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  21265002 tttttagtccttacattttgcgccgctttgaagaata 21265038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 21265468 - 21265432
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||| | ||||||||||||    
T  21265468 tttttagtccttacattttgcgcctctttgaagaata 21265432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 39729685 - 39729649
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  39729685 tttttagtccttatattttgcgtcagtttgaagaata 39729649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 13315386 - 13315422
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||| |||||||||||| |||||||||||||    
T  13315386 tttttagtccctacattttgcgtgactttgaagaata 13315422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 8750439 - 8750403
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||||||  ||||||||||||    
T  8750439 tttttagtccttacattttgcgtttctttgaagaata 8750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 18999719 - 18999683
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  18999719 tttttagtccttacattttgcttcattttgaagaata 18999683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 45728396 - 45728360
Alignment:
Q  350 tttttagtccttacattttgcgtcactttgaagaata 386  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  45728396 tttttagtccttacattttgtgtccctttgaagaata 45728360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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