View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_63 (Length: 391)
Name: NF1715_low_63
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 43396295 - 43396667
Alignment:
| Q |
11 |
aatttgtttcatagattctcgaagggagagcttcatacaaatgtcgaaatcaaaattgtgctttctgggcatttaaacagttagtgaaaaacttgaatgc |
110 |
Q |
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| T |
43396295 |
aatttgtttcagagattctcgaagggagagcttcatacaaatgtcgaaatcaaaattgtgctttctgggcatttaaacagttagtgaaaaacttgaatgc |
43396394 |
T |
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| Q |
111 |
atgttttctatcatgctaaatttgtcggaatcactgtgagcattataattttcaaaagctacggtagctcgctgtgattttgataaactcacgtgagacc |
210 |
Q |
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| T |
43396395 |
atgttttctatcatgctaaatttgtcggaatcactgtgagcattataattttcaaaagctacggtagctcactgtgattttgataaactcacgtgagacc |
43396494 |
T |
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| Q |
211 |
aagcatggactgaatttgttttgttgatttgattttgggagtgttggaaagtgtggaatttatttgtatgtggtgcaggtacggcatcgatggtggctgc |
310 |
Q |
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| T |
43396495 |
aaacatggactgaatttgttttgttgatttgattttgggagtgttggaaagtgtggaatttatttgtatgtggtgcaggtacggcgtcgatggtggctgc |
43396594 |
T |
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| Q |
311 |
tatttgtcatgcatggctattgggttatagacagaaagagaatgatggtggtggaaaagagaggacagtggtg |
383 |
Q |
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| T |
43396595 |
tatttgccatgcatggctattgggttatagacagaaagagaatgatggtggtggaaaagagaggacagtggtg |
43396667 |
T |
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