View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_64 (Length: 389)
Name: NF1715_low_64
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_64 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 51 - 389
Target Start/End: Complemental strand, 5370747 - 5370409
Alignment:
| Q |
51 |
gtgaatcctaacatacacttgagtgtgtaacatcccaaatcccctagaaacaaataactgaaacaccctcattttcaaattaactgaaataacaagaaaa |
150 |
Q |
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| T |
5370747 |
gtgaatcctaacatacacttgagtgtgtaacatcccaaatcccctagaaacaaataactgaaacaccctcattttcaaattaactgaaataacaagaaaa |
5370648 |
T |
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| Q |
151 |
caccagacctacaatacaatgcacaccttcaataaaattcagcataataataactctggagaagagaactatgaggagatggaacattttcttccccttt |
250 |
Q |
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| T |
5370647 |
caccagacctacaatacaatgcacaccttcaataaaattcagcataataataactctggagaagagaactatgaggagatggaacattttcttccccttt |
5370548 |
T |
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| Q |
251 |
tgctagtttgtaccagactgatcagctctagggataatatctgcagcaggcttggtcagtttggctactttgacaaatttagtagtgattgtagcatctc |
350 |
Q |
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| T |
5370547 |
tgctagtttgtaccagactgatcagctctagggataatatctgcagcaggcttggtcagtttggctactttgacaaatttagtagtgattgtagcatctc |
5370448 |
T |
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| Q |
351 |
tttagtgcattccaccttatgtctagctcggcaaataac |
389 |
Q |
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| T |
5370447 |
tttagtgcattccaccttatgtctagctcggcaaataac |
5370409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 5376488 - 5376411
Alignment:
| Q |
121 |
attttcaaattaactgaaataacaagaaaacaccagacctacaatacaatgcacaccttcaataaaattcagcataata |
199 |
Q |
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| T |
5376488 |
attttcagattaacttaaataacaagaaaacttcagacatacaatacaatgcaaacc-tcaaaaaaattcaacataata |
5376411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 5364480 - 5364430
Alignment:
| Q |
340 |
tgtagcatctctttagtgca-ttccaccttatgtctagctcggcaaataac |
389 |
Q |
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| T |
5364480 |
tgtagcatctttttagtgcatttccaccttacgtctagctctgcaaataac |
5364430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 1267289 - 1267210
Alignment:
| Q |
214 |
gagaactatgaggagatggaacattttcttccccttttgctagtttgtaccagactgatcagctctagggataatatctgcag |
296 |
Q |
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| T |
1267289 |
gagaactgtgaggagatggaatattttccttcccttttggtagcttgcaccaaac---tcagttctagagataatatctgcag |
1267210 |
T |
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