View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_67 (Length: 380)

Name: NF1715_low_67
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_67
NF1715_low_67
[»] chr1 (3 HSPs)
chr1 (141-273)||(31828014-31828146)
chr1 (1-83)||(31827873-31827955)
chr1 (315-373)||(31828180-31828238)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 31828014 - 31828146
Alignment:
Q  141 taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31828014 taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct 31828113  T
Q  241 atctctttgagtaaacacataaaaatcagaacc 273  Q
    |||||||||||||||||||||||||||||||||    
T  31828114 atctctttgagtaaacacataaaaatcagaacc 31828146  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31827873 - 31827955
Alignment:
Q  1 acaaaacaagttcctaagcttggttcggacattggatttgcagttaaagtcctctagagagagaccaaaactttcaaattcca 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31827873 acaaaacaagttcctaagcttggttcggacattggatttgcagttaaagtcctctagagagagaccaaaactttcaaattcca 31827955  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 31828180 - 31828238
Alignment:
Q  315 attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctca 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31828180 attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctca 31828238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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