View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_68 (Length: 378)
Name: NF1715_low_68
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_68 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 36100599 - 36100238
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36100599 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
36100500 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36100499 |
ggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
36100400 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36100399 |
catgagaatcatcttttggagttataattgctaaagcttttggtgatgttgctgttttaaatctcttgttatgtattttcatatttaggatggttgagaa |
36100300 |
T |
|
| Q |
301 |
tgaggggttttttggaccgtaaataatgtcagatgaattaaaagattgagaataatgataaa |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100299 |
tgaggggttttttggaccgtaaataatgtcagatgaattaaaagattgagaataatgataaa |
36100238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 21482590 - 21482290
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
||||| ||| |||||||||||||| | ||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| || |
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|
| T |
21482590 |
ataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagcaagtcaattataacaaaa |
21482491 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||| | || | ||||| ||||| |||| |||||||| ||||| |
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|
| T |
21482490 |
ggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttgttacttttgaggcattgaattgttgcttgga |
21482391 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||| |||||||| ||||| |||||||||||||||| ||||||||||| || |||||||||||||| |
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|
| T |
21482390 |
catgagaatcatcttttgcagttataattgccaaaggttttggtgttgttg---ttttaaatctcttgttttgtattttcatgttgaggatggttgagaa |
21482294 |
T |
|
| Q |
301 |
tgag |
304 |
Q |
| |
|
|||| |
|
|
| T |
21482293 |
tgag |
21482290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 36107858 - 36107554
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| |||| || ||||| ||||| | || |
|
|
| T |
36107858 |
ataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgtcaagtataataaaa |
36107759 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| ||| ||||||| ||||| || |||||||| ||||| ||||||||||| ||||| | || | ||||||| |||||||||||||||||||| ||||| |
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|
| T |
36107758 |
ggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttgttgcttttggcacatttaattgtttcttgga |
36107659 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
||| ||| ||||||||| |||||||||||| |||| |||||||| ||||||| ||||||||||||| || ||||||||||| || ||||| |||||||| |
|
|
| T |
36107658 |
tatgcgaatcatcttttgcagttataattgccaaaggttttggtgttgttgctgttttaaatctcttattttgtattttcatgttgaggatagttgagaa |
36107559 |
T |
|
| Q |
301 |
tgagg |
305 |
Q |
| |
|
||||| |
|
|
| T |
36107558 |
tgagg |
36107554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 34971787 - 34972091
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||| || || | || |
|
|
| T |
34971787 |
ataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaagtacaataaaa |
34971886 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| ||| |||||||| ||||| || |||||||| || || || |||||||| ||||||| || | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
34971887 |
ggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttgttacttttggcacatttaattgttgcttgga |
34971986 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||| ||||| | ||||| | ||||||| ||||||| ||||| | | |||||| |||| |||||| |
|
|
| T |
34971987 |
catgagaaacatcttttgcagttataattgccaaaggctttggggttgttgttgctttaaatatcttgtttagtattcttacatttagtatggctgagaa |
34972086 |
T |
|
| Q |
301 |
tgagg |
305 |
Q |
| |
|
||||| |
|
|
| T |
34972087 |
tgagg |
34972091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36090477 - 36090810
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||||| ||||| |||| ||||||||| |||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
36090477 |
ataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttctaaattgacatcaattgaattgagatgaagcaagtcaattataacataa |
36090576 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| || |||||||| | ||| || ||||| ||||| || ||||||||||| ||||| | || | |||||| |||| |||||||||| |||| ||||| |
|
|
| T |
36090577 |
ggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttgttacttttagcacatttaactgttacttgga |
36090676 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtg-atgttgctattttaaatctcttgttatgtattttcatatttaggatggttgaga |
299 |
Q |
| |
|
|||| |||| ||| ||| ||||||||||| |||| |||| ||| ||||||| |||| |||||||||| |||||||||||| || | ||||||| ||| |
|
|
| T |
36090677 |
catgggaactatcctttactgttataattgccaaaggttttagtgtttgttgctgttttgaatctcttgtaatgtattttcatgttgaagatggttaaga |
36090776 |
T |
|
| Q |
300 |
atgaggggttttttggaccgtaaataatgtcaga |
333 |
Q |
| |
|
|||||| ||| ||| || |||||| |||||||| |
|
|
| T |
36090777 |
atgaggtgttgttttgagtgtaaatgatgtcaga |
36090810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36079994 - 36079952
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtt |
43 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36079994 |
ataaaccttaccaagtgttgcacctgcttcaacccatgctgtt |
36079952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 8338483 - 8338169
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
8338483 |
ataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtcaattataacaaaa |
8338384 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
|| | |||||||| ||| ||||||||||| || ||||||||||||||||| ||||||| || | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
8338383 |
gatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaattcttatctgaatattgttgcttttggcacatttaattgttgcttgga |
8338284 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||| |||||||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8338283 |
catgagaagcatcttttgcagttataattgccaaagattttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatggttgagaa |
8338184 |
T |
|
| Q |
301 |
tgaggggttttttgg |
315 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
8338183 |
tgaggtgttgtttgg |
8338169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 6838619 - 6838305
Alignment:
| Q |
1 |
ataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaagtcaattataacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||| ||||| |||||||| |||| || ||||| ||||||| || |
|
|
| T |
6838619 |
ataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaacatgtcaagtataacaaaa |
6838520 |
T |
|
| Q |
101 |
gacacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatttaattgttgtttgga |
200 |
Q |
| |
|
| ||| ||||||| ||||| | |||||||| ||||| || |||||||| ||||| | || | ||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
6838519 |
ggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttgttgcttttggcacatttaactgtttcttgga |
6838420 |
T |
|
| Q |
201 |
catgagaaccatcttttggagttataattgctaaagcttttggtgatgttgctattttaaatctcttgttatgtattttcatatttaggatggttgagaa |
300 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||| || |||| ||||||| ||||||||||||| || |||||||| || || ||||| |||||||| |
|
|
| T |
6838419 |
catgagaatcatcttttacagttataattgccaaaggcttcggtgttgttgctgttttaaatctcttattttgtatttttatgttgaggatagttgagaa |
6838320 |
T |
|
| Q |
301 |
tgaggggttttttgg |
315 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
6838319 |
tgaggtgttgtttgg |
6838305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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