View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_69 (Length: 376)
Name: NF1715_low_69
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_69 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 36907585 - 36907946
Alignment:
| Q |
1 |
atgtgctgacttttcctattccacgagcaatgaccactctatttttgtttgatgatgatcgataataatacaattgggacccttttttcataaaaaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36907585 |
atgtgctgacttttcctattccacgagcaatgaccactctatttttgtt-----atgatcgataataatacaattgggacccttttttcataaaaaagag |
36907679 |
T |
|
| Q |
101 |
attagcacatcaatgaaaagtcatatattagtagtactatatagatagattaaataaagttactttagcagttggatatgtggaatttgcaagctatcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36907680 |
attagcacatcaatgaaaagtcatatattagtagtactatatagatagattaaataaagttactttagcagttggatatgtggaatttgcaagctatcct |
36907779 |
T |
|
| Q |
201 |
taccaaattccattgacgtaggtgactgtgagtctcatagctagcagtactaattaaactttcactaaatcttttaattaagttgactggattttcttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36907780 |
taccaaattccattgacgtaggtgactgtgagtctcatagctagcagtactaattaaactttcactaaatcttttaattaagttgactggattttcttgt |
36907879 |
T |
|
| Q |
301 |
tggtgcgttctacactcattatatactttaaaattgtttgagatcatttatgctttcgaactctgtg |
367 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36907880 |
tggtgagttctacactcattatatactttaaaattgtttgagatcatttatgctttcgaactctgtg |
36907946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University