View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_70 (Length: 376)
Name: NF1715_low_70
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_70 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 1287480 - 1287138
Alignment:
| Q |
16 |
atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttgtctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1287480 |
atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttatctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt |
1287381 |
T |
|
| Q |
116 |
ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1287380 |
ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt |
1287281 |
T |
|
| Q |
216 |
ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1287280 |
ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt |
1287181 |
T |
|
| Q |
316 |
ccctatatctaagtactcttttattaaaggcaaatggtgccta |
358 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
1287180 |
ccctatatctaagcactcttttattaaagacaaatggtgccta |
1287138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 31448440 - 31448388
Alignment:
| Q |
303 |
atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgc |
355 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||| | ||||| ||||| |
|
|
| T |
31448440 |
atactctctccgtccctatatctaagcacccttttattagatgcaaagggtgc |
31448388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 31922916 - 31922871
Alignment:
| Q |
304 |
tactctcttcgtccctatatctaagtactcttttattaaaggcaaa |
349 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
31922916 |
tactctctccgtccctatatctaagcacccttttattaaaggcaaa |
31922871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 11248652 - 11248694
Alignment:
| Q |
313 |
cgtccctatatctaagtactcttttattaaaggcaaatggtgc |
355 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
11248652 |
cgtccctatatctaagcactattttattagaggcaaatggtgc |
11248694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 30264625 - 30264578
Alignment:
| Q |
304 |
tactctcttcgtccctatatctaagtactcttttattaaaggcaaatg |
351 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
30264625 |
tactccctccgtccctatatctaagcactcttttattagaggcaaatg |
30264578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 21743080 - 21743044
Alignment:
| Q |
313 |
cgtccctatatctaagtactcttttattaaaggcaaa |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
21743080 |
cgtccctatatctaagcactcttttattagaggcaaa |
21743044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 14949243 - 14949285
Alignment:
| Q |
313 |
cgtccctatatctaagtactcttttattaaaggcaaatggtgc |
355 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14949243 |
cgtccctacatctaagcactcttttattagaggcaaatggtgc |
14949285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 12457017 - 12457069
Alignment:
| Q |
303 |
atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgc |
355 |
Q |
| |
|
|||||| || |||||||||||||||| || ||||||||| ||||||| ||||| |
|
|
| T |
12457017 |
atactccctccgtccctatatctaagcacccttttattagaggcaaagggtgc |
12457069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University