View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_71 (Length: 375)
Name: NF1715_low_71
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 34543840 - 34543491
Alignment:
| Q |
9 |
gagatgaagatggcactcagcttttttctatgtctttgtctgttctttttgcatcaagttgaactctgttatgtagtttcagctatttggattatattta |
108 |
Q |
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| T |
34543840 |
gagatgaagatggcactcagcttttttctatgtctttgtctgttctttttgcatcaagttgaactctgttatgtagtttcagctatttggattatattta |
34543741 |
T |
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| Q |
109 |
ttattcactagcactaattctcatactttctcaaaacatcttagcttcttgagtattattagttgagactttaaaacattgtcattcctatattatgaca |
208 |
Q |
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| T |
34543740 |
ttattcactagcactaattctcatactttctcaaaacatcttagcttcttgagtattattagttgagactttaaaacattgtcattcctatattatgaca |
34543641 |
T |
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| Q |
209 |
agttttctcttctaactctcaatttctttcatagcctgattacttgaggttccctctagttatctggttgtgtaattgttgctttttaatgcttgctgtc |
308 |
Q |
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| T |
34543640 |
agttttctcttctaactctcaatttctttcatagcctgattacttgaggttccctctagttatctggttgtgtaattgttgctttttaatgcttgctgtc |
34543541 |
T |
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| Q |
309 |
attcattattgagtggttggtattcttgttgcaatttgtgtagcttcatt |
358 |
Q |
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| T |
34543540 |
attcattattgagtggttggtattcttgttgcaatttgtgtagcttcatt |
34543491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 342
Target Start/End: Complemental strand, 34914865 - 34914669
Alignment:
| Q |
136 |
ttctcaaaacatcttagcttcttgagtattattagttgagactttaaaacatt-gtcattcctatattatgacaagttttctcttctaactctcaatttc |
234 |
Q |
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| T |
34914865 |
ttctcaaaacattttaccttgttgagtatta---gttgagact--aaaacgtttgtcattcctatattttgacaagt-----cttctaactctcagtttc |
34914776 |
T |
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| Q |
235 |
tttcatagcctgattacttgaggttccctctagttatctggttgtgtaattgttgctttttaatgcttgctgtcattcattattgagtggttggtattct |
334 |
Q |
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| T |
34914775 |
tt-catagcttgataacttgagattccctctagctatctggttgtttgattgttgctttttaatgcttgttgtcattcatcattgagtggttggtcttct |
34914677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 34915018 - 34914921
Alignment:
| Q |
37 |
tatgtctttgtctgttctttttg--catcaagttgaactctgttatgtagtttcagctatttggattatatttattattcactagcactaattctcata |
133 |
Q |
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| T |
34915018 |
tatgtctttgtctgttcttttttgacatcaagttgaactctattatctagttttagtt-tttggatttcatctattattcactagcactaattctcata |
34914921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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