View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_74 (Length: 368)

Name: NF1715_low_74
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_74
NF1715_low_74
[»] chr1 (4 HSPs)
chr1 (1-220)||(47558996-47559228)
chr1 (284-357)||(47559294-47559367)
chr1 (313-353)||(47397085-47397125)
chr1 (288-342)||(12028216-12028270)
[»] chr6 (2 HSPs)
chr6 (288-339)||(1831228-1831279)
chr6 (288-336)||(22012080-22012128)
[»] chr4 (2 HSPs)
chr4 (288-347)||(25201748-25201806)
chr4 (288-341)||(52460628-52460681)
[»] scaffold1266 (1 HSPs)
scaffold1266 (288-342)||(1659-1713)
[»] scaffold0263 (1 HSPs)
scaffold0263 (288-342)||(18305-18359)
[»] chr7 (3 HSPs)
chr7 (288-342)||(21863945-21863999)
chr7 (298-339)||(28460025-28460066)
chr7 (288-336)||(8389263-8389311)
[»] chr8 (1 HSPs)
chr8 (288-336)||(1981688-1981736)
[»] chr5 (1 HSPs)
chr5 (288-336)||(13820575-13820623)
[»] chr2 (1 HSPs)
chr2 (288-336)||(44322186-44322234)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47558996 - 47559228
Alignment:
Q  1 aaaagatatgtgatgatttatagagttgtagacaatactacttaaagtgttttagacattaaattggaaaccgtatacaacatctcttccatgaatacaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47558996 aaaagatatgtgttgatttatagagttgtagacaatactacttaaagtgtttgagacattaaattggaaaccgtatacaacatctcttccatgaatacaa 47559095  T
Q  101 acgataggacaagttgtaataataa------nnnnnnnnnatcgca-------aaggaaccaatttatgtccagactacattacaacaatatgctacaaa 187  Q
    || ||||||||||||||||||||||               ||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  47559096 actataggacaagttgtaataataatttttttttttttttatcgcatatcattaaggaaccaatttatgtccagactacattacaacaatatgctacaaa 47559195  T
Q  188 tttggtgaagaatcaagtaaacatacaaataga 220  Q
    |||||||||||||||||||||||||||||||||    
T  47559196 tttggtgaagaatcaagtaaacatacaaataga 47559228  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 47559294 - 47559367
Alignment:
Q  284 cgagagaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaaataaagactgatatt 357  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  47559294 cgagagaagtagagaacaataagacctgtaaagtaaattgaaattttagcacctgaaaaataaagactgatatt 47559367  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 47397085 - 47397125
Alignment:
Q  313 gaagtagattgaaattttagcacctaaaaaataaagactga 353  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  47397085 gaagtagattgaaaatttagcacctgaaaaataaagactga 47397125  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 12028270 - 12028216
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaa 342  Q
    ||||||| ||||||| || |  ||||||||||| |||||||||||||||||||||    
T  12028270 agaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaa 12028216  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 1831279 - 1831228
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaa 339  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||| ||||    
T  1831279 agaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaa 1831228  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 22012080 - 22012128
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacc 336  Q
    |||||||||||| ||||  || ||||||||||| |||||||||||||||    
T  22012080 agaagtagagaaaaatagcatatgtgaagtagactgaaattttagcacc 22012128  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 25201806 - 25201748
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaaataaa 347  Q
    |||||||||||||||||| | || ||||||| | ||||||||||||||| ||||||||||    
T  25201806 agaagtagagaacaataatacctttgaagtaaagtgaaattttagcacc-aaaaaataaa 25201748  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 52460681 - 52460628
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaa 341  Q
    |||||||||||||||||| |  || |||||||| ||||||||||||||| ||||    
T  52460681 agaagtagagaacaataacacatgcgaagtagactgaaattttagcacccaaaa 52460628  T

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Target: scaffold1266 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 1713 - 1659
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaa 342  Q
    |||||||||||||||||| |  | ||||||||| |||||||||||||||| ||||    
T  1713 agaagtagagaacaataacacttatgaagtagactgaaattttagcacctcaaaa 1659  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 18305 - 18359
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaa 342  Q
    |||||||||||||||||| |  | ||||||||| |||||||||||||||| ||||    
T  18305 agaagtagagaacaataacacttatgaagtagactgaaattttagcaccttaaaa 18359  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 21863999 - 21863945
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacctaaaaa 342  Q
    |||||||||||||||||  | ||| |||||||| |||||||||||||||| ||||    
T  21863999 agaagtagagaacaatagcacctgcgaagtagagtgaaattttagcacctcaaaa 21863945  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 28460025 - 28460066
Alignment:
Q  298 aacaataagatctgtgaagtagattgaaattttagcacctaa 339  Q
    |||||||  |||||||||||||| ||||||||||||||||||    
T  28460025 aacaatagaatctgtgaagtagactgaaattttagcacctaa 28460066  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 8389263 - 8389311
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacc 336  Q
    |||||||||||| ||||| |  ||||||||||| |||||||||||||||    
T  8389263 agaagtagagaaaaataacacatgtgaagtagactgaaattttagcacc 8389311  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 1981736 - 1981688
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacc 336  Q
    |||||||||||| ||||  || ||||||||||| |||||||||||||||    
T  1981736 agaagtagagaaaaatagcatatgtgaagtagactgaaattttagcacc 1981688  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 13820575 - 13820623
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacc 336  Q
    ||||||||||||||| || |  ||||||||||| |||||||||||||||    
T  13820575 agaagtagagaacaacaacacatgtgaagtagactgaaattttagcacc 13820623  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 44322186 - 44322234
Alignment:
Q  288 agaagtagagaacaataagatctgtgaagtagattgaaattttagcacc 336  Q
    |||||||||||| ||||  || ||||||||||| |||||||||||||||    
T  44322186 agaagtagagaaaaatagcatatgtgaagtagactgaaattttagcacc 44322234  T

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