View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_76 (Length: 364)
Name: NF1715_low_76
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 9106726 - 9107071
Alignment:
| Q |
1 |
tgaaccctatggtccaacttacagcaatatatatatgtattttggatcaggccccaccataccatgagaagtgctgtctctatggtgttcgttgagatat |
100 |
Q |
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| T |
9106726 |
tgaaccctatggtccaacttacagcaatatatatatgtattttggatcaggccccaccataccatgagaagtgctgtctctatggtgttcgttgagatat |
9106825 |
T |
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| Q |
101 |
aatcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaaaccagttgtattatacat |
200 |
Q |
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| T |
9106826 |
agtcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaaaccagttgtattatacat |
9106925 |
T |
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| Q |
201 |
tacaatgaaaatggtcgttgtgcacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaatgctagatgattacgatat |
300 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9106926 |
tacaatgagaatggtcgttgtacacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaatgctagatgattatgatat |
9107025 |
T |
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| Q |
301 |
tccggtaagcatgtcttcttgatgactttaatgcaagaggacctga |
346 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107026 |
tctggtaagcatgtcttcttgatgactttaatgcaagaggacctga |
9107071 |
T |
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