View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_79 (Length: 361)
Name: NF1715_low_79
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 42927147 - 42926815
Alignment:
| Q |
18 |
cattcaattcaatgtttttgcgtatnnnnnnngaatgaatggaaggactaaggagtacaatgataaccacaagtgatatttgagatttagcctagactat |
117 |
Q |
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| T |
42927147 |
cattcaattcaatctttttgcgtataaaaaa-gaatgaatggaaggactaaggagtacaatgataaccacaagtgatatttgagatttagcctagactat |
42927049 |
T |
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| Q |
118 |
cacaaaacaaatttgaccaatattcaagaattgaaagcatgaaatgtgagatgtgaccttcaattatcaagtaaagctcaatgccaagaattggccccgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42927048 |
cacaaaacaaatttgaccaatattcaagaattgaaagcatgaaatgtgagatgtgaccttcaattatcaagtaaagctcaatgccaagaattggccccgc |
42926949 |
T |
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| Q |
218 |
aacctgagagttttgacggattgcatatgcatatggtactttgtggatttgaattgaaactatgctatgcccctccacttctcttttggctacatcaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926948 |
aacctgagagttttgacggattgcatatgcatatggtactttgtggatttgaattgaaactatgctatgcccctccacttctcttttggctacatcaaga |
42926849 |
T |
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| Q |
318 |
tcaaaaggaacaaatttcatacatgttatctctg |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42926848 |
tcaaaaggaacaaatttcatacatgttatctctg |
42926815 |
T |
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