View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_8 (Length: 630)
Name: NF1715_low_8
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 279 - 548
Target Start/End: Original strand, 11878183 - 11878452
Alignment:
| Q |
279 |
ggtgttgaacttgcactattggcatagtaataattcctcattctgtcttcttccccccacatattgcccacaccagttcatacattatatacatttacat |
378 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878183 |
ggtgatgaacttccactattggcatagtaataactcctcattctgtcttcttccccccacatattgcccacaccagttcatacattatatacatttacat |
11878282 |
T |
|
| Q |
379 |
aattaagttgtataattaagggtatcatgtttttaatattgattttggttagatatttgtaccatattctataattcatgctcataaccccacaaatacg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878283 |
aattaagttgtataattaagggtatcatgtttttaatattgattttggttagatatttgtaccatattctataattcatgctcataaccccacaaatacg |
11878382 |
T |
|
| Q |
479 |
tggacatgtagtaggaaatacaaagctaaatttggattattctttatcacaaactaccaaaaggttatgt |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878383 |
tggacatgtagtaggaaatacaaagctaaatttggattattctttatcacaaactaccaaaaggttatgt |
11878452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 11877916 - 11878129
Alignment:
| Q |
13 |
aaaatttcaagataagaaaaactcgaatgattatttttaaaactaatcttaaaatctgcatatttctttcaaaaacatttcttagttatagttttatata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11877916 |
aaaatttcaagataagaaaaactcgaataattatttttaaaactaatcttaaaatctgcatatttctttcaaaaacatttcttagatatagttttatata |
11878015 |
T |
|
| Q |
113 |
tacttttctccatcaaaagctgcaatgttaatctcattattgcactttttccgggcattgttgacaacattatatctcacatgttaatctcattattgag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878016 |
tacttttctccatcaaaagctgcaatgttaatctcattattgcactttttccgggcattgttgacaacattatatctcacatgttaatctcattattgag |
11878115 |
T |
|
| Q |
213 |
aagtcacatggctt |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11878116 |
aagtcacatggctt |
11878129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University