View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_83 (Length: 358)
Name: NF1715_low_83
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 47068720 - 47069049
Alignment:
| Q |
15 |
gtatctccatgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaacattttgatggataagttttggactgccaagatatctgatttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47068720 |
gtatctccatgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaacattttgatggataagttttggactgccaagatatctgatttt |
47068819 |
T |
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| Q |
115 |
gggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagcacatggcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
47068820 |
gggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagaacgtggcaa |
47068919 |
T |
|
| Q |
215 |
tatcagtgaaaacagatgtttatagctatggaatagtgctgttagaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47068920 |
tatcagtgaaaacagatgtttatagctatggaatagtgctgttggaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagat |
47069019 |
T |
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| Q |
315 |
tcttcttgctggttggacttataagtgctt |
344 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47069020 |
tcttcttgctggttggacttataagtgctt |
47069049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 47075610 - 47075283
Alignment:
| Q |
15 |
gtatctccatgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaacattttgatggataagttttggactgccaagatatctgatttt |
114 |
Q |
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||||||||||||||| ||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
47075610 |
gtatctccatgaagaatgtgaggcaccaatcattcattgtgacataaagcctcaaaacattttgatggatgagttttggactgccaagatatccgatttt |
47075511 |
T |
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| Q |
115 |
gggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagcacatggcaa |
214 |
Q |
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|| |||||||||||||||||||| |||||||||||||| |||||| | || ||||||||| | || |||||||| || || ||||||| | || || ||| |
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| T |
47075510 |
ggtcttgcaaaacttttaatgccggaccaaaccagaactttcacggttgttagagggacacggggctacatggctccagaatggaacatgaacgtgccaa |
47075411 |
T |
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| Q |
215 |
tatcagtgaaaacagatgtttatagctatggaatagtgctgttagaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagat |
314 |
Q |
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||||| | || ||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075410 |
tatcacttaaggcagatgtttatagctatggaataatgttgtttgaaattttatgttgcagaagaaacctagatgttaatgtgttggaacctgaggagat |
47075311 |
T |
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| Q |
315 |
tcttcttgctggttggacttataagtgc |
342 |
Q |
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|||||| |||||||| ||||||||||| |
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| T |
47075310 |
tcttctctctggttgggcttataagtgc |
47075283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 47086931 - 47086865
Alignment:
| Q |
271 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttcttgctggttggacttata |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
47086931 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttctctctggttgggcttata |
47086865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 4130588 - 4130637
Alignment:
| Q |
22 |
catgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaa |
71 |
Q |
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|||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
4130588 |
catgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaa |
4130637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 4107407 - 4107456
Alignment:
| Q |
22 |
catgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaa |
71 |
Q |
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|||||||||||||| |||| ||||||||||| ||| ||||||||||||| |
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| T |
4107407 |
catgaagagtgtgacactcccatcattcattgtgacataaagcctcaaaa |
4107456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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