View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_84 (Length: 356)
Name: NF1715_low_84
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_84 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 3184850 - 3184509
Alignment:
| Q |
9 |
gaacaaaatcaaatcaatattgaattcaatggaagatggagagataactatatctgcttatgatactgcttgggttgctcttgttgaagatgttcataat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3184850 |
gaacaaaatcaaatcaatattgaattcaatggaagatggagagataactatatctgcttatgatactgcttgggttgctcttgttgaagatgttcataat |
3184751 |
T |
|
| Q |
109 |
agtggtactcctcaatttccctcaagtctagaatggatttctaaaaatcaacttcaagatggttcatggggtgatagtcaattgttttctgctcatgatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3184750 |
agtggtactcctcaatttccctcaagtctagaatggatttctaaaaatcaacttcaagatggttcatggggtgatagtcaattgttttctgctcatgatc |
3184651 |
T |
|
| Q |
209 |
gaatcattaacacattggcttgtgttattgctttaaaatcgtggaatatgcaccccgaaaagtgcgagaaaggtaatatatgttagtcgtgttatcaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3184650 |
gaatcattaacacattggcttgtgttattgctttaagatcgtggaatatgcaccccgaaaagtgcgagaaaggtaatatatgttagtcgtgttatcaaga |
3184551 |
T |
|
| Q |
309 |
ttttaaattacagtcaactcgcagatatttttaccatagaaa |
350 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3184550 |
ttttaaattatagtcaacttgcagatatttttaccatagaaa |
3184509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 3224873 - 3225146
Alignment:
| Q |
15 |
aatcaaatcaatattgaattcaatggaagatggagagataactatatctgcttatgatactgcttgggttgctcttgttgaagatgttcataatagtggt |
114 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| ||| || ||| |||||||||||||||||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
3224873 |
aatcaaatcaatattgagttcattggaagatggaaagacaaatatgtctgcttatgatactgcttgggttgcacttgtggaagatgtgcatactagtggt |
3224972 |
T |
|
| Q |
115 |
actcctcaatttccctcaagtctagaatggatttctaaaaatcaacttcaagatggttcatggggtgatagtcaattgttttctgctcatgatcgaatca |
214 |
Q |
| |
|
|| || |||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||| |
|
|
| T |
3224973 |
acaccacaatttccatctagtctagagtggattgtgaaaaatcaacttcaagatggttcatggggtgatagtcaactgtttttaacacatgatcggatcc |
3225072 |
T |
|
| Q |
215 |
ttaacacattggcttgtgttattgctttaaaatcgtggaatatgcaccccgaaaagtgcgagaaaggtaatata |
288 |
Q |
| |
|
||| |||| |||||||||||||||| |||| | | |||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
3225073 |
ttagcacactggcttgtgttattgcattaacaacatggaatatgcaccctgaaaagtgtgacaaaggtaatata |
3225146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 37957679 - 37957731
Alignment:
| Q |
37 |
atggaagatggagagataactatatctgcttatgatactgcttgggttgctct |
89 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
37957679 |
atggaagatggagagataaccatatcagcttatgacacagcttgggttgctct |
37957731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University