View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_87 (Length: 354)
Name: NF1715_low_87
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_87 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0757 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 16096955 - 16097154
Alignment:
| Q |
8 |
aaggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16096955 |
aaggaaaattgagaaaataaattcaacttcattcatgaacgtcttagggccaatacagtagcttgtacctgtgtcgaaagttcctctatatttgtttact |
16097054 |
T |
|
| Q |
108 |
catcaacttttggttggccaagatagcactattttcacttataccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16097055 |
catcaacttttggttggccaagatagcactattttcacttacaccaaatacccctctcttgcctcgctcggtctcggcacgatactcattttgagctatg |
16097154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 215 - 338
Target Start/End: Original strand, 16097235 - 16097358
Alignment:
| Q |
215 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttgaacctctcccacgcat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
16097235 |
ttaagccttaaacttttggtaaatatttacatctgggttttttcacccaagtcatgggttggtcatctttttagtaacagtttaaacctctcccaagcat |
16097334 |
T |
|
| Q |
315 |
catagagagattcaccgtcacctt |
338 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16097335 |
catagagagattcaccgtcacctt |
16097358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 19863490 - 19863528
Alignment:
| Q |
289 |
taacagtttgaacctctcccacgcatcatagagagattc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19863490 |
taacagtttgaacctctcccaagcatcatagagagattc |
19863528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 64579 - 64542
Alignment:
| Q |
289 |
taacagtttgaacctctcccacgcatcatagagagatt |
326 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
64579 |
taacagtttgaacctctcccaagcatcatagagagatt |
64542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0757 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0757
Description:
Target: scaffold0757; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 6026 - 5988
Alignment:
| Q |
289 |
taacagtttgaacctctcccacgcatcatagagagattc |
327 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
6026 |
taacagtctgaacctctcccaagcatcatagagagattc |
5988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 12815844 - 12815896
Alignment:
| Q |
163 |
ctcttgcctcgctcggtctcggcacgatactcattttgagctatgctctcaat |
215 |
Q |
| |
|
||||| || ||||||||||||||||||| | |||||||||| ||| ||||||| |
|
|
| T |
12815844 |
ctcttaccacgctcggtctcggcacgattcgcattttgagccatgttctcaat |
12815896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University