View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_88 (Length: 354)
Name: NF1715_low_88
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_88 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 717117 - 716791
Alignment:
| Q |
21 |
agctctcaaaacttgatgaatctttggcacacctcactatgtgtttattttaaattcatttaacaaaaaaccaacaataattgagataaattctaattgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
717117 |
agctctcaaaacttgatgaatctttggcacacctcactatgtgtttattttaaattcatttaacaaaaaaccaacaataattgagataaattctaattgt |
717018 |
T |
|
| Q |
121 |
tgtccaaccagaattgtttctgaagattgtcaactatgttattgtccaattgaagagccttggtgagaagttctgaagaaatttgattagacccaaatac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
717017 |
tgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaatttgattagacccaaatac |
716918 |
T |
|
| Q |
221 |
ctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataagacca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
716917 |
ctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataagacca |
716818 |
T |
|
| Q |
321 |
attggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
716817 |
attggaaacacaaagacatctcctttg |
716791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 347
Target Start/End: Original strand, 702274 - 702505
Alignment:
| Q |
119 |
gttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccaattgaagagccttggtgagaagttctgaagaaattt---gattagaccca |
215 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||||| |||||||| | ||||| ||| |||||||||| ||||||||| |||| ||||||| ||| |
|
|
| T |
702274 |
gttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatcca |
702373 |
T |
|
| Q |
216 |
aatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataa |
315 |
Q |
| |
|
||||| | ||| ||| ||||| || | || ||| |||||| ||||||||| ||| |||| |||||||||| |||| ||| |||||||||||| | |
|
|
| T |
702374 |
aatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatga |
702473 |
T |
|
| Q |
316 |
gaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
702474 |
gaccaattggaaacacaaacacatctcctttg |
702505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 347
Target Start/End: Original strand, 717568 - 717807
Alignment:
| Q |
111 |
ttctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccaattgaagagccttggtgagaagttctgaagaaattt---gat |
207 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||||||| ||||| |||||||| | ||||| ||| |||||||||| ||||||||| |||| ||| |
|
|
| T |
717568 |
ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
717667 |
T |
|
| Q |
208 |
tagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaa |
307 |
Q |
| |
|
|||| |||||||| | ||| ||| ||||| || | | ||| |||||| ||||||||| ||| |||| |||||||||| |||| ||| |||||| |
|
|
| T |
717668 |
tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa |
717767 |
T |
|
| Q |
308 |
gtgaataagaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
717768 |
gtgaatgagaccaattggaaacacaaacacatctcctttg |
717807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 347
Target Start/End: Original strand, 710533 - 710774
Alignment:
| Q |
109 |
aattctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccaattgaagagccttggtgagaagttctgaagaaattt---g |
205 |
Q |
| |
|
||||||| |||||||||| ||| |||||||| ||||||||||| ||||| |||||||| | ||||| ||| |||||||||| ||||||||| |||| | |
|
|
| T |
710533 |
aattctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgg |
710632 |
T |
|
| Q |
206 |
attagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttgg |
305 |
Q |
| |
|
|||||| |||||||| | ||| ||| ||||| || | | ||| |||||| ||||||||| ||| |||| |||||||||| |||| ||| |||| |
|
|
| T |
710633 |
attagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgg |
710732 |
T |
|
| Q |
306 |
aagtgaataagaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
710733 |
aagtgaatgagaccaattggaaacacaaacacatctcctttg |
710774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 347
Target Start/End: Complemental strand, 713174 - 712933
Alignment:
| Q |
109 |
aattctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccaattgaagagccttggtgagaagttctgaagaaattt---g |
205 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||| || ||||| |||||||| | ||||| ||| |||||||||| |||||||||||||| | |
|
|
| T |
713174 |
aattctagttgttgtccacccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttgg |
713075 |
T |
|
| Q |
206 |
attagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttgg |
305 |
Q |
| |
|
|||||| |||||||| | ||| ||| ||||| || | | ||| |||||| ||||||||| ||| |||| |||||||||| ||| | ||| ||| |
|
|
| T |
713074 |
attagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattga |
712975 |
T |
|
| Q |
306 |
aagtgaataagaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
712974 |
aagtgaatgaggccaattggaaacacaaacacatctcctttg |
712933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 347
Target Start/End: Complemental strand, 722869 - 722675
Alignment:
| Q |
156 |
atgttattgtccaattgaagagccttggtgagaagttctgaagaaattt---gattagacccaaatacctccttaataatagtgataactcttgaattat |
252 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| || ||| ||||| || ||||| |||||||||||| ||| | || || ||| | |
|
|
| T |
722869 |
atgttattgtccatttgaaaagccttggtgagaagttctgaataattttttggattaaactcaaatgtatccttaataatacggatgattcctggatttt |
722770 |
T |
|
| Q |
253 |
ggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataagaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
| ||| ||| ||||||||| |||||||||||||||| || ||||||| | ||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
722769 |
gactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctcctttg |
722675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 20357822 - 20357928
Alignment:
| Q |
234 |
gtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaataagaccaattggaaacacaa |
333 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||||| ||| |||| ||||| |||| |||| ||| |||| || ||||||||||||||||| ||||||| |
|
|
| T |
20357822 |
gtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa |
20357921 |
T |
|
| Q |
334 |
agacatc |
340 |
Q |
| |
|
| ||||| |
|
|
| T |
20357922 |
acacatc |
20357928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 35313666 - 35313621
Alignment:
| Q |
302 |
ttggaagtgaataagaccaattggaaacacaaagacatctcctttg |
347 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| |||||| |
|
|
| T |
35313666 |
ttggaagtgaatgagaccgattggaaacacaaatacatcacctttg |
35313621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University