View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_89 (Length: 351)

Name: NF1715_low_89
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_89
NF1715_low_89
[»] chr7 (16 HSPs)
chr7 (66-347)||(11100005-11100287)
chr7 (67-337)||(23532513-23532784)
chr7 (66-290)||(23522329-23522554)
chr7 (66-340)||(11544589-11544864)
chr7 (66-347)||(11527185-11527466)
chr7 (66-340)||(44356862-44357135)
chr7 (196-342)||(15932281-15932426)
chr7 (66-305)||(43173459-43173698)
chr7 (67-340)||(44359984-44360256)
chr7 (227-307)||(30218057-30218137)
chr7 (227-290)||(9066379-9066442)
chr7 (227-290)||(9070337-9070400)
chr7 (64-115)||(15942444-15942494)
chr7 (227-290)||(18016872-18016935)
chr7 (79-123)||(9697170-9697214)
chr7 (1-45)||(9961025-9961069)
[»] chr6 (24 HSPs)
chr6 (66-347)||(17996838-17997120)
chr6 (66-290)||(13727720-13727945)
chr6 (66-342)||(20090469-20090745)
chr6 (67-347)||(25969985-25970267)
chr6 (67-347)||(25974425-25974707)
chr6 (71-340)||(19573661-19573930)
chr6 (67-342)||(19008508-19008786)
chr6 (66-339)||(16688413-16688688)
chr6 (66-347)||(18929403-18929685)
chr6 (71-334)||(23607021-23607286)
chr6 (66-339)||(22467393-22467668)
chr6 (97-305)||(11231198-11231406)
chr6 (64-340)||(19577281-19577564)
chr6 (200-340)||(19011659-19011798)
chr6 (73-302)||(16666142-16666373)
chr6 (200-339)||(8668073-8668211)
chr6 (200-339)||(8650043-8650181)
chr6 (200-305)||(19019325-19019429)
chr6 (97-177)||(11225876-11225956)
chr6 (66-123)||(19011866-19011924)
chr6 (66-115)||(8667947-8667996)
chr6 (66-115)||(19019506-19019555)
chr6 (67-115)||(8649918-8649966)
chr6 (294-342)||(13727261-13727309)
[»] chr2 (21 HSPs)
chr2 (67-342)||(3071468-3071744)
chr2 (66-338)||(23696378-23696651)
chr2 (66-338)||(23692591-23692864)
chr2 (66-347)||(4876643-4876924)
chr2 (67-342)||(29603776-29604053)
chr2 (200-339)||(7310883-7311021)
chr2 (209-339)||(5771860-5771989)
chr2 (200-339)||(26126082-26126220)
chr2 (200-339)||(45278935-45279073)
chr2 (200-339)||(45286234-45286372)
chr2 (66-123)||(5771733-5771791)
chr2 (66-123)||(26120826-26120884)
chr2 (66-123)||(26126288-26126346)
chr2 (66-123)||(7311088-7311146)
chr2 (67-115)||(45278810-45278858)
chr2 (67-115)||(45286109-45286157)
chr2 (200-269)||(26120690-26120758)
chr2 (71-115)||(17932932-17932976)
chr2 (227-283)||(26382145-26382201)
chr2 (66-123)||(30558584-30558641)
chr2 (227-283)||(26383964-26384020)
[»] chr3 (31 HSPs)
chr3 (66-342)||(17601545-17601822)
chr3 (66-342)||(17593537-17593814)
chr3 (67-340)||(8368251-8368526)
chr3 (66-347)||(10812996-10813279)
chr3 (67-347)||(10815897-10816174)
chr3 (65-347)||(38700028-38700311)
chr3 (67-340)||(14789719-14789996)
chr3 (66-340)||(94541-94815)
chr3 (66-342)||(19767671-19767949)
chr3 (187-339)||(8854113-8854264)
chr3 (67-340)||(16091696-16091978)
chr3 (97-340)||(16082559-16082802)
chr3 (211-340)||(103403-103531)
chr3 (66-181)||(15417672-15417786)
chr3 (209-339)||(18556648-18556777)
chr3 (194-339)||(14561073-14561217)
chr3 (187-339)||(8856960-8857102)
chr3 (198-339)||(14566257-14566397)
chr3 (67-305)||(10776903-10777131)
chr3 (209-339)||(26900595-26900724)
chr3 (268-342)||(15417788-15417862)
chr3 (66-150)||(103583-103667)
chr3 (66-123)||(26900791-26900849)
chr3 (67-123)||(18556524-18556581)
chr3 (67-123)||(26907395-26907452)
chr3 (263-339)||(26907204-26907280)
chr3 (66-113)||(8854288-8854335)
chr3 (67-120)||(51199114-51199168)
chr3 (66-123)||(10497497-10497554)
chr3 (201-305)||(15926755-15926858)
chr3 (67-146)||(14566451-14566530)
[»] chr8 (26 HSPs)
chr8 (66-342)||(21938468-21938745)
chr8 (67-290)||(21935959-21936183)
chr8 (67-347)||(31708764-31709044)
chr8 (66-347)||(31710983-31711264)
chr8 (66-335)||(21834680-21834951)
chr8 (67-342)||(14366000-14366275)
chr8 (66-340)||(20134936-20135209)
chr8 (67-342)||(14370131-14370415)
chr8 (67-342)||(14369580-14369864)
chr8 (66-335)||(21408227-21408488)
chr8 (66-335)||(21802719-21802980)
chr8 (67-340)||(20131812-20132084)
chr8 (200-339)||(14676564-14676702)
chr8 (200-339)||(14673358-14673496)
chr8 (234-339)||(3303184-3303289)
chr8 (200-339)||(3300085-3300222)
chr8 (200-339)||(36281289-36281427)
chr8 (67-115)||(14673223-14673271)
chr8 (67-175)||(16907111-16907219)
chr8 (67-123)||(3299960-3300017)
chr8 (66-115)||(36281514-36281563)
chr8 (66-123)||(3303025-3303083)
chr8 (66-107)||(14676430-14676471)
chr8 (227-290)||(16077856-16077919)
chr8 (227-282)||(17526671-17526726)
chr8 (227-282)||(37718125-37718180)
[»] scaffold0037 (1 HSPs)
scaffold0037 (66-347)||(20531-20813)
[»] chr5 (13 HSPs)
chr5 (66-342)||(40936458-40936735)
chr5 (67-342)||(40933064-40933340)
chr5 (66-339)||(26857438-26857712)
chr5 (67-318)||(26863702-26863944)
chr5 (66-253)||(32965632-32965819)
chr5 (66-342)||(8460025-8460301)
chr5 (67-122)||(19049912-19049967)
chr5 (227-347)||(20680153-20680274)
chr5 (200-305)||(38836749-38836853)
chr5 (66-115)||(38840532-38840581)
chr5 (67-115)||(38836614-38836662)
chr5 (67-121)||(20817269-20817323)
chr5 (227-282)||(20675131-20675186)
[»] chr1 (16 HSPs)
chr1 (66-342)||(18433048-18433323)
chr1 (66-335)||(19751602-19751871)
chr1 (65-335)||(19749375-19749645)
chr1 (66-340)||(12020225-12020499)
chr1 (66-340)||(20514227-20514501)
chr1 (67-340)||(20442358-20442640)
chr1 (66-347)||(24276822-24277103)
chr1 (64-347)||(24280935-24281218)
chr1 (200-339)||(15158077-15158215)
chr1 (200-339)||(15142651-15142789)
chr1 (200-301)||(20435270-20435370)
chr1 (66-114)||(20435457-20435505)
chr1 (67-146)||(36910665-36910744)
chr1 (198-301)||(36910514-36910612)
chr1 (67-115)||(15158292-15158340)
chr1 (66-112)||(15142869-15142915)
[»] scaffold0320 (1 HSPs)
scaffold0320 (67-342)||(11884-12159)
[»] chr4 (10 HSPs)
chr4 (68-342)||(23882218-23882493)
chr4 (70-347)||(27788911-27789190)
chr4 (66-342)||(23878568-23878844)
chr4 (67-339)||(10968593-10968866)
chr4 (66-339)||(10757100-10757374)
chr4 (66-339)||(10970271-10970545)
chr4 (67-339)||(10754824-10755097)
chr4 (227-290)||(30953185-30953248)
chr4 (86-123)||(53993022-53993059)
chr4 (79-123)||(13563547-13563591)
[»] scaffold0139 (1 HSPs)
scaffold0139 (66-339)||(2901-3175)
[»] scaffold0179 (2 HSPs)
scaffold0179 (66-342)||(27353-27629)
scaffold0179 (67-342)||(24705-24970)
[»] scaffold0167 (1 HSPs)
scaffold0167 (65-342)||(10451-10728)
[»] scaffold0208 (1 HSPs)
scaffold0208 (66-347)||(1504-1786)
[»] scaffold0023 (2 HSPs)
scaffold0023 (65-340)||(146535-146811)
scaffold0023 (97-339)||(149774-150017)
[»] scaffold0264 (1 HSPs)
scaffold0264 (140-342)||(13003-13205)
[»] scaffold1778 (1 HSPs)
scaffold1778 (194-339)||(968-1112)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-347)||(194452-194736)
[»] scaffold0878 (2 HSPs)
scaffold0878 (66-347)||(4101-4384)
scaffold0878 (66-154)||(1689-1779)
[»] scaffold0369 (1 HSPs)
scaffold0369 (66-347)||(7410-7693)
[»] scaffold0045 (1 HSPs)
scaffold0045 (87-334)||(78558-78805)
[»] scaffold0123 (2 HSPs)
scaffold0123 (67-219)||(10995-11149)
scaffold0123 (213-290)||(8794-8871)
[»] scaffold0074 (2 HSPs)
scaffold0074 (200-340)||(56484-56623)
scaffold0074 (67-112)||(56359-56404)
[»] scaffold1505 (2 HSPs)
scaffold1505 (200-339)||(421-559)
scaffold1505 (67-115)||(636-684)
[»] scaffold0071 (2 HSPs)
scaffold0071 (66-181)||(44452-44566)
scaffold0071 (268-342)||(44376-44450)
[»] scaffold0130 (4 HSPs)
scaffold0130 (227-339)||(14980-15092)
scaffold0130 (67-123)||(19195-19252)
scaffold0130 (227-290)||(19028-19091)
scaffold0130 (76-115)||(15205-15244)
[»] scaffold0202 (4 HSPs)
scaffold0202 (200-339)||(13858-13996)
scaffold0202 (227-339)||(10371-10483)
scaffold0202 (66-123)||(10587-10645)
scaffold0202 (67-115)||(14083-14131)
[»] scaffold0716 (1 HSPs)
scaffold0716 (227-290)||(2145-2208)
[»] scaffold0001 (1 HSPs)
scaffold0001 (67-114)||(150975-151022)
[»] scaffold0443 (1 HSPs)
scaffold0443 (67-107)||(6522-6562)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 11100005 - 11100287
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11100005 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggtttttagacccctcaagaaggccttaacacccttaaaagaagcccaagggccc 11100104  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11100105 cgggcgcgcattacccccggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 11100204  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    | |||||||||||||||||||||||| | |||||||||||||| || |||||| |||||||||||||||||| ||||| ||||    
T  11100205 ctgaaacccaagcccatagaaggctataaataccacccttgggaacactctcaggtatccaataatcagtctgaaaccctagt 11100287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 67 - 337
Target Start/End: Complemental strand, 23532784 - 23532513
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||  ||||||||||||||||||| ||| ||||||| |||  ||||||| |||||    
T  23532784 tggaccgtcataatattcctaaggacttaaaagacctccaaaagggctgcttagacccctcaagaaggccttagcacccttgaaaagagcccaacggccc 23532685  T
Q  166 cgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||||||   | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | ||||| ||    
T  23532684 aaggcgcgcattacccatagcgccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaataccactattacttggagactaagcaa 23532586  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtcta 337  Q
    |||||||||||||||||||||||||| | |||||||||||| | || |||||||| |||||||| ||||||||    
T  23532585 ccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagcatccaatagtcagtcta 23532513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 23522554 - 23522329
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| |||||||   |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||    
T  23522554 gtggaccgtcataatattcctaaggactcaaaagacctccaaaagggcttcttagacccctcaagaaggccttagcacccttaaaaagagcccaagggcc 23522455  T
Q  165 ccgggcgcgcattacccc---cgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaag 261  Q
    |  ||||||||||||||    |||  ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||    
T  23522454 caaggcgcgcattacccataacgt--cgccttaataatctctagaatcttctagaaacctccc-taaatacataaatacccctattacttggagactaag 23522358  T
Q  262 taaccgaaacccaagcccatagaaggcta 290  Q
     ||||||||||||| ||||||||||||||    
T  23522357 caaccgaaacccaaacccatagaaggcta 23522329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 66 - 340
Target Start/End: Original strand, 11544589 - 11544864
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    |||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||  ||||  | ||||    
T  11544589 gtggaccgtcataaaattcctaaggactt-aaagacctccaaaagggcttcttagacctctcaagaaggccttagcacccttaaaaagagccacaaggcc 11544687  T
Q  165 ccg-ggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||| ||||||   |||||   | ||| ||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||     
T  11544688 ccgaggcgcgttctacccatagcgccaccataatgatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagc 11544786  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||||||||||||||||||||||||||| | |||||||||||||| || |||||||| |||  |||||||||||||||    
T  11544787 aaccgaaacccaagcccatagaaggctataaataccacccttgggaacactctcaaggatctgataatcagtctaaaa 11544864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 11527185 - 11527466
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||| |||||||| |||| ||||||| | ||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||||||  ||||  | ||||    
T  11527185 gtggatcgtcataaaattcctaaggactt-aaagacccccaaaagggcttcttagacctctcaagaaggccttagcacccttaaaaagagccacaaggcc 11527283  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  ||||||   |||||   | ||| ||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  11527284 cgaggcgcgttctacccatagcgccaccataatgatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagca 11527382  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||||| |||  ||||||||||||||||| ||||    
T  11527383 accgaaacccaagcccatagaaggctataaataccacccttgggaacactctcaaggatctgataatcagtctaaaaccctagt 11527466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 340
Target Start/End: Original strand, 44356862 - 44357135
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || ||||     
T  44356862 gtggactgtcataatattcctaaggacctgaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcct 44356961  T
Q  166 cgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||| |     ||||||  | ||| |||||||||  ||||| ||||||||| ||||||||||||||||||||||| |||| | ||||| ||    
T  44356962 aaggcgcgcattatcatatcgccgccatactaaatctctagaaatttctataaaccgccc-taaatacataaatacccctattatttggagactaagcaa 44357060  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    || | ||||||||||||||||||||| | ||||||||||| | || | ||||||||||| ||||||||||||||||    
T  44357061 ccaagacccaagcccatagaaggctataaataccaccctt-gagaacatctcaagtatctaataatcagtctaaaa 44357135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 342
Target Start/End: Complemental strand, 15932426 - 15932281
Alignment:
Q  196 taatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacat 295  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||| | ||||||||||||| ||||||| | ||    
T  15932426 taatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaaccaagacccaagcccataaaaggctataaat 15932328  T
Q  296 accacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||| | || |||||||||||||||||||||||||||||||    
T  15932327 accacccttgagaacactctcaagtatccaataatcagtctaaaacc 15932281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 305
Target Start/End: Complemental strand, 43173698 - 43173459
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  | || ||| | ||||| ||| |||||  |||||||    
T  43173698 gtggaccgtcataatattcttaaggacctgaaagacctccaaaagggcttttagaccccttaaagaagccttagcgcccttcaaaaaagccttagggccc 43173599  T
Q  166 cgggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||| ||||| ||   | |||||||| ||||||||||||||||| ||||| ||| ||  ||||||| |||||| |||||| |||  || | ||| ||    
T  43173598 taggcgcacattatccatggcgccgcctcgataatctctagaatcttatagaatccg-cctaaaatacacaaatactcctattgcttaaggaccaagcaa 43173500  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttg 305  Q
    ||||||||||||| ||||  |||||| | ||||||||||||    
T  43173499 ccgaaacccaagctcataacaggctataaataccacccttg 43173459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 340
Target Start/End: Original strand, 44359984 - 44360256
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| |||  ||| ||||||||||||     
T  44359984 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagcca 44360083  T
Q  158 aagggccccgggcgcgcattacccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggc 257  Q
    || ||||   ||||||||||| |     ||||||   |||    ||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| | |    
T  44360084 aaaggcctaaggcgcgcattatcatatcgccgcc---ata----cta-aatct-ctagaaaccgccc-taaatacataaatacccctattatttggagac 44360173  T
Q  258 taagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||| |||| | ||||||||||||||||| ||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  44360174 taagcaaccaagacccaagcccatagaagactataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 44360256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 30218137 - 30218057
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggg 307  Q
    ||||| |||||||||||||||||||||| || ||| ||||||||||||||| ||||| || ||| | ||||||||||||||    
T  30218137 aaatatataaatacccctattacttgggagccaagcaaccgaaacccaagctcatagcagactataaataccacccttggg 30218057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 9066379 - 9066442
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||| | || |||||| || ||| ||||||||||||||||||||| ||||||    
T  9066379 aaatacataaataccctttttgcttgggagccaagcaaccgaaacccaagcccatagcaggcta 9066442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 9070337 - 9070400
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||| |||| |||||| || ||| ||| ||||||||||||||||| ||||||    
T  9070337 aaatacataaatacccttattgcttgggagccaagcaactgaaacccaagcccatagcaggcta 9070400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 15942494 - 15942444
Alignment:
Q  64 aagtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  15942494 aagtggaccgtcataatattcctaaggacct-aaaaacctccaaaagggctt 15942444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 18016872 - 18016935
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||| | || |||||| || ||| |||| |||||||||||||||| ||||||    
T  18016872 aaatacataaatacccttgttgcttgggagccaagcaaccaaaacccaagcccatagcaggcta 18016935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 9697214 - 9697170
Alignment:
Q  79 atattcgtaaggacctgaaagacctccaaaagggcttttagaccc 123  Q
    |||||| ||||||||| ||||||||| | ||||||||||||||||    
T  9697214 atattcttaaggacctaaaagacctctagaagggcttttagaccc 9697170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9961069 - 9961025
Alignment:
Q  1 gatgacattggaagtgcttctgaggcaaaaagaacacgttgcaaa 45  Q
    |||| |||||||||||||| ||||| ||||||||||||| |||||    
T  9961069 gatggcattggaagtgcttttgaggaaaaaagaacacgtcgcaaa 9961025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 17997120 - 17996838
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17997120 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggtttttagacccctcaagaaggccttaacacccttaaaagaagcccaagggccc 17997021  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17997020 cgggcgcgcattacccccggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 17996921  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    | |||||||||||||||||||||||| | |||||||||||||| || |||||| |||||||||||||||||| ||||| ||||    
T  17996920 ctgaaacccaagcccatagaaggctataaataccacccttgggaacactctcaggtatccaataatcagtctgaaaccctagt 17996838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 13727945 - 13727720
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  13727945 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagccctagggccc 13727846  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||    
T  13727845 cgggtgcgcattacccacggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttagagactaagcaa 13727746  T
Q  265 ccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||| |||||||||||||    
T  13727745 ccgaaacccaagtccatagaaggcta 13727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 66 - 342
Target Start/End: Complemental strand, 20090745 - 20090469
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||||||| ||| |||||||||||||||||| | ||||     
T  20090745 gtggaccgtcataatattcctaaggacctgaaagacctctcaaaaggctttaagacctctcaagaaggctttagcacccttaaaagaagccctaaggcca 20090646  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||||||||||| ||  |  ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  20090645 cgggcgcgcattatccatggcgccgcctcactaatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaa 20090547  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||||||||||||||| |||||| | |||||||||||| | || ||||||  ||||||| |||||||||||||||    
T  20090546 ccgaaacccaagcccataggaggctataaataccacccttgagaacactctcatctatccaagaatcagtctaaaacc 20090469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 25969985 - 25970267
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||    
T  25969985 tggaccgtcataatattcctaaggacctgaaagacctccaaaaaggcttttagacccctcaagaaggccttaacacccttcaaaaaagccctacggcccc 25970084  T
Q  167 gggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    | ||||||||||  |   | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||| |||    
T  25970085 gagcgcgcattattcagagcgccacctcaataaactctagaatcttctagaaaccgcccctaaatacataaacacccctattacttggagattaagcaac 25970184  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaa-gtatccaataatcagtctaaaaccatagt 347  Q
    ||||||||||||||||||||||||| | |||| || |||| |  |  |||||| | |||||||||||||||||||||| ||||    
T  25970185 cgaaacccaagcccatagaaggctataaatactactcttgagatcattctcaaggcatccaataatcagtctaaaaccctagt 25970267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 25974425 - 25974707
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||    
T  25974425 tggaccgtcataatattcctaaggacctgaaagacctccaaaaaggcttttagacccctcaagaaggccttaacacccttcaaaaaagccctacggcccc 25974524  T
Q  167 gggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    | ||||||||||  |   | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||| |||    
T  25974525 gagcgcgcattattcagagcgccacctcaataaactctagaatcttctagaaaccgcccctaaatacataaacacccctattacttggagattaagcaac 25974624  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaa-gtatccaataatcagtctaaaaccatagt 347  Q
    ||||||||||||||||||||||||| | |||| || |||| |  |  |||||| | |||||||||||||||||||||| ||||    
T  25974625 cgaaacccaagcccatagaaggctataaatactactcttgagatcattctcaaggcatccaataatcagtctaaaaccctagt 25974707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 340
Target Start/End: Complemental strand, 19573930 - 19573661
Alignment:
Q  71 ccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggc 170  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || ||||   ||     
T  19573930 ccgtcataatattcctaaggacctgaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcctaagga 19573831  T
Q  171 gcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaa 269  Q
    |||||||  |     ||||||  | ||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| | ||||| |||| |     
T  19573830 gcgcattgtcatatcgccgccatactaaatctctagaaacttctataaaccgccc-taaatacataaatacccctattacttggagactaagcaaccaag 19573732  T
Q  270 acccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  19573731 acccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 19573661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 67 - 342
Target Start/End: Complemental strand, 19008786 - 19008508
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaa--ggcgttaacacccttaaaagaagcccaagggc 163  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||  |||||||||||| ||  ||| ||  |||||||| ||  ||||||| |||    
T  19008786 tggaccgtcataatattcctaaggacctaaaagaccttcaaaagggcttcctagacccctcaaaaaaaggccttggcacccttagaaagagcccaaaggc 19008687  T
Q  164 cccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||  |||||| ||| |||   | ||||||| | ||| |||||||| |||||||||||| |||  |||||| |||||||||||||||||||| |||||||     
T  19008686 ccaaggcgcgtatttcccatagcgccgccttactaacctctagaaccttctagaaacctcccg-aaatacgtaaatacccctattacttggaggctaagc 19008588  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||| | ||||||||||||||||||||| | |||||||| ||| | || |||||||| ||| |||||||| |||||||||    
T  19008587 aaccaagacccaagcccatagaaggctataaataccacctttgagaacactctcaagcatctaataatcaatctaaaacc 19008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 339
Target Start/End: Original strand, 16688413 - 16688688
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagaccc-ctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| | || || ||||||||||  ||||||||||| ||  |||||||| ||||    
T  16688413 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttgaacctctcaagaagggcttaacacccttgaagaaagcccaaaggcc 16688512  T
Q  165 ccgggcgcgcattacccccgt--gccgcctcaata-atctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaag 261  Q
    |  |||||| ||| |||  ||  ||||||| | |  | ||||| || |||||||||||||||| ||||||| |||||||||||||||||||| |  ||||    
T  16688513 caaggcgcgtatttccca-gtaagccgccttactggacctctaaaaccttctagaaaccgccc-taaatacctaaatacccctattacttggagattaag 16688610  T
Q  262 taaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
     |||| ||| ||||||||||||||||||| | |||||||||||| | || |||||| | |||||||| ||||||||||    
T  16688611 caaccaaaatccaagcccatagaaggctataaataccacccttgagaacactctcaggcatccaatattcagtctaaa 16688688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 18929685 - 18929403
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||||| ||||| || |||||||||||  |||||||||||| ||||| ||  |||| ||| ||  |||| || ||||    
T  18929685 gtggaccgtcataatattcctaaggacctaaaagatcttcaaaagggcttcctagacccctcaaaaaggccttggcacctttacaaagagcctaaaggcc 18929586  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||| ||| |||   | ||||||| | ||| |||||||| |||||||||||| |||  |||||| ||||||||||||||| |||| ||||||| |    
T  18929585 caaggcgcgtatttcccatagcgccgccttactaacctctagaaccttctagaaaccacccg-aaatacgtaaatacccctattatttggaggctaagca 18929487  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||| | ||||||||||||||||||||| | |||||||| ||| | || |||||||| ||| |||||||| ||||||||| ||||    
T  18929486 accaagacccaagcccatagaaggctataaataccacctttgagaacactctcaagcatctaataatcaatctaaaaccctagt 18929403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 334
Target Start/End: Complemental strand, 23607286 - 23607021
Alignment:
Q  71 ccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaa-cacccttaaaagaagcccaagggccccgg 168  Q
    |||||||||||||| |||| |||| |||||||| |||||||| ||  |||||||||||| ||||| |||| |||||||||||  ||||||| |||||  |    
T  23607286 ccgtcataatattcctaagaacctaaaagaccttcaaaagggtttcctagacccctcaaaaaggctttaagcacccttaaaaagagcccaaaggcccaag 23607187  T
Q  169 gcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccg 267  Q
    ||||| ||| | |   | ||||||| | ||| ||||||||  |||||||||||||||  ||||||| ||||||||||||||||||| | ||||| ||||     
T  23607186 gcgcgtatttctcatagcgccgccttactaacctctagaactttctagaaaccgccca-aaatacacaaatacccctattacttggagactaagcaacca 23607088  T
Q  268 aaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagt 334  Q
    ||||||||||||||||||||||| | ||||| |||||| | || |||||| ||||| ||||||||||    
T  23607087 aaacccaagcccatagaaggctataaatacctcccttgagaacactctcaggtatctaataatcagt 23607021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 66 - 339
Target Start/End: Original strand, 22467393 - 22467668
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    |||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||  ||| |||| | || | |  ||||| ||||    
T  22467393 gtggactgtcataatattcttaaggacctaaaagacctccaaaagggcttcttagatccctcaagaagggcttagcaccttgaagaaagccccaaaggcc 22467492  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatc-tctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    |  |||||| ||| ||    | ||||||| | ||| | ||||||| ||| |||||||| |||| |||||| |||||||||||||||||| | | |||||     
T  22467493 caaggcgcgtatttccgagagagccgccttactaaacctctagaaccttatagaaacc-ccccaaaatacctaaatacccctattactttgagactaagc 22467591  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||||||||||||||||||||||||| | |||||||||||| | || |||||||| ||| |||| ||||||||||    
T  22467592 aaccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaaggatcgaatattcagtctaaa 22467668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 97 - 305
Target Start/End: Original strand, 11231198 - 11231406
Alignment:
Q  97 aagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcgcgcattacccccgtgccgcctcaat 196  Q
    ||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || |||||  ||||||||||  |     ||||||  | |    
T  11231198 aagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcccaaggcgcgcattttcatatcgccgccatact 11231297  T
Q  197 aa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacat 295  Q
    || ||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||| | ||||| |||| | ||||||||||||||||| ||| | ||    
T  11231298 aaatctctagaaacttctagaagccgccc-taaatacataaataccgctattacttggagactaagcaaccaagacccaagcccatagaagactataaat 11231396  T
Q  296 accacccttg 305  Q
    ||||||||||    
T  11231397 accacccttg 11231406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 340
Target Start/End: Complemental strand, 19577564 - 19577281
Alignment:
Q  64 aagtggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaag 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| ||   ||| ||||||||||    
T  19577564 aagtggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggcctttgtacctttaaaagaag 19577465  T
Q  155 cccaagggccccgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgg 253  Q
    || || ||||   || |||||||  |     ||||||  | ||| ||||||||| ||||||||||||||||     || |||||||||||||||||||||    
T  19577464 ccaaaaggccgaaggagcgcattgtcatatcgccgccatactaaatctctagaaacttctagaaaccgccc-----tatataaatacccctattacttgg 19577370  T
Q  254 gggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaag--tatccaataatcagtctaaaa 340  Q
     | ||||| |||| | ||||||| ||||||||||||| | |||||||||||| | || ||||||||  ||| |||||||||||||||||    
T  19577369 agactaagcaaccaagacccaagtccatagaaggctataaataccacccttgagaacactctcaagtatatacaataatcagtctaaaa 19577281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 19011798 - 19011659
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||||||  |||  |||||| ||||||||||||||||||||   ||||| |||| ||||||||||||||||||||||| | ||||||    
T  19011798 ctctagaaccttctagaaactaccca-aaatacctaaatacccctattacttggacactaagaaaccaaaacccaagcccatagaaggctataaatacca 19011700  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||||| | || |||||||||||| ||||||||||||||||    
T  19011699 cccttgagaacactctcaagtatctaataatcagtctaaaa 19011659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 302
Target Start/End: Original strand, 16666142 - 16666373
Alignment:
Q  73 gtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcg 171  Q
    |||||||||||| ||||||||| |||||||||||||||||||| || |||| ||||||||||  ||||||||||| ||  |||||||| |||||  | ||    
T  16666142 gtcataatattcctaaggacctaaaagacctccaaaagggcttcttggacctctcaagaagggcttaacacccttgaagaaagcccaaaggcccaagacg 16666241  T
Q  172 cgcattacccccgt-gccgcctcaata-atctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaa 269  Q
    || ||| |||     ||||||| | |  | |||||||| |||||||||||||||| || |||| |||||||||||| ||||||| |  |||| |||| ||    
T  16666242 cgtatttcccagaaagccgccttactggacctctagaaccttctagaaaccgccc-tatatacctaaatacccctactacttggagattaagcaaccaaa 16666340  T
Q  270 acccaagcccatagaaggctacacataccaccc 302  Q
    ||||||||||||||||||||| | |||||||||    
T  16666341 acccaagcccatagaaggctataaataccaccc 16666373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 8668073 - 8668211
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||||||| |||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||| ||| | ||||||    
T  8668073 ctctagaaccttctagaaaccaccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaagactataaatacca 8668171  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | ||  |||||||||||||||| ||||||||||    
T  8668172 cccttgagaacattctcaagtatccaatattcagtctaaa 8668211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 8650043 - 8650181
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||  | ||||||||||||||| |||| | ||||| |||| |||| ||||| |||||||||||| | ||||||    
T  8650043 ctctagaaccttctagaaaccgccca-aaaggcctaaatacccctattatttggagactaagcaaccaaaactcaagctcatagaaggctataaatacca 8650141  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||||| |||||||||| ||||||||||    
T  8650142 cccttgagaacactctcacgtatccaatattcagtctaaa 8650181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 19019429 - 19019325
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  19019429 ctctagaaccttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 19019331  T
Q  300 cccttg 305  Q
    ||||||    
T  19019330 cccttg 19019325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 11225876 - 11225956
Alignment:
Q  97 aagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcgcgcatt 177  Q
    ||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || |||||  ||||||||||    
T  11225876 aagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcccaaggcgcgcatt 11225956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 19011924 - 19011866
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  19011924 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagaccc 19011866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 8667947 - 8667996
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  8667947 gtggaccgtcataatattcctaaggacctaagagacctccaaaagggctt 8667996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 19019555 - 19019506
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||| |||||||||||| || |||||| ||||||||||||||||||||    
T  19019555 gtggactgtcataatattcctatggacctaaaagacctccaaaagggctt 19019506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 8649918 - 8649966
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||  ||||||||| | ||||||||||||||||||    
T  8649918 tggaccgtcataatatttctaaggacctaagagacctccaaaagggctt 8649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 13727309 - 13727261
Alignment:
Q  294 ataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||| | || |||||| ||||||||||||||||||||||||    
T  13727309 ataccacccttgagaacactctcaggtatccaataatcagtctaaaacc 13727261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 3071468 - 3071744
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  3071468 tggaccgtcatagtattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagccctagggcccc 3071567  T
Q  167 gggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||    
T  3071568 gggcgcgcattacccacggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaac 3071667  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||||||||||||||||||||| | |||||||||||| | || |||||| ||||||||||||||||||||||||    
T  3071668 cgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaggtatccaataatcagtctaaaacc 3071744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 23696378 - 23696651
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  23696378 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacactcttaaaagaagcccaagggccc 23696477  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||| ||||||||||   | |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||| ||    
T  23696478 cgggcacgcattacccatggcgccgcctcaacaatctctagaatcttctagaaaccgcccctaaatacctaaaaacccctattacttggagactaagcaa 23696577  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaa 338  Q
    |||||||||||||||||||||||||| | |||||||||||| | || ||||||  ||||||||| |||||||||    
T  23696578 ccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcatttatccaatagtcagtctaa 23696651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 23692591 - 23692864
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23692591 gtggaccgtcataatattcttaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagcccaagggccc 23692690  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    || ||  |||||||||  |  |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||| ||    
T  23692691 cgagcatgcattacccatggcgccgcctcaacaatctctagaatcttctagaaaccgcccctaaatacctaaaaacccctattacttggagactaagcaa 23692790  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaa 338  Q
    |||||||||||||||||||||||||| | |||||||||||| | || ||||||  ||||||||| |||||||||    
T  23692791 ccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcatttatccaatagtcagtctaa 23692864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 4876643 - 4876924
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||| ||||||||||| |||||||||||| |||||| ||||  ||||  |||||| |||||||||| ||| ||||||||||||||| || |||| ||    
T  4876643 gtggaccatcataatattcctaaggacctgaaggacctctaaaaatgcttaaagacccgtcaagaaggctttagcacccttaaaagaagtcctagggtcc 4876742  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    | |||| ||  || ||  |  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  4876743 caggcgtgcgctatccgtggcgccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaa 4876841  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    || |||||||||| ||| |||||||| | |||||||||||| | || |||||||||||| |||||||||||||||||| ||||    
T  4876842 ccaaaacccaagctcattgaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagt 4876924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 342
Target Start/End: Complemental strand, 29604053 - 29603776
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||  ||| | ||| | |||  ||||||| |||||    
T  29604053 tggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttatacccctcaagaagggcttagcgcccctgaaaagagcccaaaggccc 29603954  T
Q  166 cgggcgcgcattacccccgt---gccgcctcaataatc-tctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaag 261  Q
      |||||| ||  | ||| |   ||||||| ||||| | ||||||| ||||||||||||||||  |||||| |||||||||||||||||||| | |||||    
T  29603953 aaggcgcgtat--ctcccataaagccgccttaataaacctctagaaccttctagaaaccgccca-aaatacctaaatacccctattacttggagactaag 29603857  T
Q  262 taaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
     |||| ||||||| ||||||||||||||| | |||||||||||| | || ||||||  |||||||| ||||||| ||||||    
T  29603856 caaccaaaacccatgcccatagaaggctataaataccacccttgagaacactctcatctatccaattatcagtcaaaaacc 29603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 7311021 - 7310883
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  7311021 ctctagaaccttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 7310923  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||||| |||||||||| ||||||||||    
T  7310922 cccttgagaacactctcaggtatccaatattcagtctaaa 7310883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 339
Target Start/End: Original strand, 5771860 - 5771989
Alignment:
Q  209 cttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttgggg 308  Q
    ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| | |||||||||||| |     
T  5771860 cttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaataccacccttgaga 5771958  T
Q  309 accctctcaagtatccaataatcagtctaaa 339  Q
     | ||||||||||||||||| ||||||||||    
T  5771959 gcactctcaagtatccaatattcagtctaaa 5771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 26126220 - 26126082
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||||||||||||||||||||  |||  | |||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||| | ||||||    
T  26126220 ctctagaatcttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccgaaactcaagcccatagaaggctataaatacca 26126122  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| |  | |||||||| || ||||| ||||||||||    
T  26126121 cccttgagagcactctcaagcattcaatattcagtctaaa 26126082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 45278935 - 45279073
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  45278935 ctctagaaccttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 45279033  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || ||||||   ||| |||| ||||||||||    
T  45279034 cccttgagaacactctcagagatcgaatattcagtctaaa 45279073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 45286234 - 45286372
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  45286234 ctctagaaccttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 45286332  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || ||||||   ||| |||| ||||||||||    
T  45286333 cccttgagaacactctcagagatcgaatattcagtctaaa 45286372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 5771733 - 5771791
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  5771733 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagaccc 5771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26120884 - 26120826
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  26120884 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagaccc 26120826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26126346 - 26126288
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  26126346 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagaccc 26126288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 7311146 - 7311088
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||| ||||||||    
T  7311146 gtggaccgtcataatattcctatggacctaaaagacctccaaaagggcttcttagaccc 7311088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 45278810 - 45278858
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  45278810 tggaccgtgataatattcctaaggacctaaaagacctccaaaagggctt 45278858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 45286109 - 45286157
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  45286109 tggaccgtgataatattcctaaggacctaaaagacctccaaaagggctt 45286157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 26120758 - 26120690
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaa 269  Q
    |||||||||||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||||||    
T  26120758 ctctagaatcttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccgaa 26120690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 17932976 - 17932932
Alignment:
Q  71 ccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||||||    
T  17932976 ccgtcataatattcctatggacctaaaagacctccaaaagggctt 17932932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26382145 - 26382201
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatag 283  Q
    |||||||||||||||||| || |||||| || ||| |||||||||||||| ||||||    
T  26382145 aaatacataaatacccctgttgcttgggagccaagcaaccgaaacccaagtccatag 26382201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 30558641 - 30558584
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagaccc 123  Q
    |||||||||||  |||||| |||| ||||  ||||||||||||||| |||||||||||    
T  30558641 gtggaccgtcaatatattcctaagaacctagaagacctccaaaaggacttttagaccc 30558584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26383964 - 26384020
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatag 283  Q
    |||||| ||||||| ||| || |||||| || ||| |||||||||||||||||||||    
T  26383964 aaatacgtaaatacgcctgttgcttgggagccaagcaaccgaaacccaagcccatag 26384020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 17601545 - 17601822
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17601545 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagcccaagggccc 17601644  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||| |||||||||||  |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||    
T  17601645 cgggagcgcattacccatggcgccgcctcaataatctgtagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaa 17601744  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||||||||| |||||||||||| | |||| ||||||| | || ||||||| |||||||||||||||||||||||    
T  17601745 ccgaaacccaagcacatagaaggctataaatactacccttgagaacactctcaaatatccaataatcagtctaaaacc 17601822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 17593537 - 17593814
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17593537 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagcccaagggccc 17593636  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||||||||||||||   | ||||||||||||||||  ||||||||||||||||  || ||||||||||||||||||||||||||||| | ||||| ||    
T  17593637 cgggcgcgcattacccatggcgccgcctcaataatctgaagaatcttctagaaactacctctaaatacataaatacccctattacttggagactaagcaa 17593736  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||||||||||||||||| | ||||||||||||   || ||||||  |||||||||||||||||||||||    
T  17593737 ccgaaacccaagcccatagaaggctataaataccacccttgacaacactctcagatatccaataatcagtctaaaacc 17593814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 67 - 340
Target Start/End: Complemental strand, 8368526 - 8368251
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||    
T  8368526 tggaccgttataatattcctaaggacctgaaagaccttcaaaagggcttcttagacccctcaagaaggccttagcacccttaaaaagagcccaagggccc 8368427  T
Q  166 cgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||||||   | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  8368426 aaggcgcgcattacccatagcgccgcctcaataatctctagaatcttctagaaaccgcccttaaatacataaatacccctattacttggagactaagtaa 8368327  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||||||||||||||||||||||||| | |||||||||||| | || ||||||| ||||||||| |||||||||||    
T  8368326 ccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaaatatccaatagtcagtctaaaa 8368251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 10813279 - 10812996
Alignment:
Q  66 gtggaccgtcataatattcgtaa-ggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||    
T  10813279 gtggaccgttataatattcttaaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggctttaacacccttaaaagaagcc-atgggcc 10813181  T
Q  165 ccgggcgcgcattacccccgt-gccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
     ||||||||||||||||  |  ||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||  | |||||     
T  10813180 tcgggcgcgcattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctattacttgaagactaaga 10813081  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    |||| ||||||||||||||||||||||| | ||||| |||||| | |  |||||| |||||||||||||| ||||||||| ||||    
T  10813080 aaccaaaacccaagcccatagaaggctataaataccgcccttgagaatactctcaggtatccaataatcaatctaaaaccctagt 10812996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 10816174 - 10815897
Alignment:
Q  67 tggaccgtcataatattcgtaa-ggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||     
T  10816174 tggaccgttataatattcttaaaggacctgaaagacctccaaaatggcttttagacccctcaagaaggccttaacacccttaaaagaag-ccatgggcct 10816076  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaat-aatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    ||||||||||||||||   | ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||     ||||||| | ||||| |    
T  10816075 cgggcgcgcattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacc-----tacttggagactaagca 10815981  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||  ||||||||| ||||||||||||| | |||||||||||| | || |||||| |||||||||||||| ||||||||| ||||    
T  10815980 actaaaacccaagtccatagaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagt 10815897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 65 - 347
Target Start/End: Original strand, 38700028 - 38700311
Alignment:
Q  65 agtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaa-cacccttaaaagaagcccaagggc 163  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| || | | |  ||| ||||||||||||| ||||||| |||| || || |||||    
T  38700028 agtggaccgtcataatattcctaaggacctgaaagacctccaaaaggactctaa-agaccttaagaaggcgttaaacacccttgaaaggaggcctagggc 38700126  T
Q  164 cccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||||||||||||||  ||  |  ||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| | |||||     
T  38700127 cccgggcgcgcattgtccatggcgccgcctcaataacctctagaatgttctagaaaccgcccttaaatacgtaaatacccctattacttggagactaagc 38700226  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    |||| |||||||||||||||  |||||| | |||||||||||  | || ||||||  |||| |||||||||||||||||| ||||    
T  38700227 aaccaaaacccaagcccataagaggctataaataccacccttaagaacactctcacctatcgaataatcagtctaaaaccctagt 38700311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 67 - 340
Target Start/End: Complemental strand, 14789996 - 14789719
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccc-tcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||| ||||| ||||||| | |||||||| |  |||||||| |||||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  14789996 tggaccgtcatattattcctaaggactttaaagaccttcggaagggcttctagaccccctcaagaaggtcttaacacccttaaaagaggcccaagggccc 14789897  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaataatc-tctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    ||||||||||||||||   | |||| ||||| || | |||||||||||||||||||||||| ||||||| |||||||||||||||||||   | |||| |    
T  14789896 cgggcgcgcattacccgtggcgccgactcaacaaacatctagaatcttctagaaaccgcccttaaatacgtaaatacccctattacttgaaagttaagca 14789797  T
Q  264 accgaaacccaagcccat-agaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||| |||||||||||||| ||||||||| | |||||| | ||| | |  ||||||  |||||||||||||||||||||    
T  14789796 accaaaacccaagcccataagaaggctataaataccatcgttgagaagactctcatctatccaataatcagtctaaaa 14789719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 340
Target Start/End: Complemental strand, 94815 - 94541
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |||  ||||    ||||    
T  94815 gtggaccgtcataatattcctaaggactt-aaagacctccaaaagggcttcttagacctctcaagaaggccttagcacccttgaaaagagccatgaggcc 94717  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||||  |||||   | ||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  94716 caaggcgcgctctacccatagcgccgccataatgatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagca 94618  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||| |||||||||||||| |||| ||| | |||||| ||||| | || |||||||||||| ||||||||||||||||    
T  94617 accaaaacccaagcccatggaagactataaataccatccttgagaacactctcaagtatctaataatcagtctaaaa 94541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 66 - 342
Target Start/End: Complemental strand, 19767949 - 19767671
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctttt-agacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| ||||||| || |  ||||||||||| ||||||||||  |||||    
T  19767949 gtggaccgtcataatatttctaaggacctgaaagacctccaaaagggctttttagatccctcaataaagtcttaacacccttgaaagaagcccttgggcc 19767850  T
Q  165 ccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaa-tacataaatacccctattacttgggggctaagt 262  Q
     ||||||| ||||   |  |  |||||||| |||| |  ||||||||||||||||||||||| ||| ||||||||||||||||||||||    |||||||    
T  19767849 tcgggcgcacattgttcatgacgccgcctcgataaacg-tagaatcttctagaaaccgcccccaaagtacataaatacccctattacttaaacgctaagt 19767751  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||| |||||||||||||||||||||||| | |||||| ||||| | |  ||||| | |||| ||||||||||||||||||    
T  19767750 aactgaaacccaagcccatagaaggctataaataccatccttgagaagactctcgattatcgaataatcagtctaaaacc 19767671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 187 - 339
Target Start/End: Complemental strand, 8854264 - 8854113
Alignment:
Q  187 ccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaag 286  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| |||| |||||||||||||||||||    
T  8854264 ccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccatattacttggagactaagcaaccaaaacccaagcccatagaag 8854166  T
Q  287 gctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||| | |||||||||||| | || ||||||||||||||||| ||||||||||    
T  8854165 gctataaataccacccttgagaacactctcaagtatccaatattcagtctaaa 8854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 340
Target Start/End: Original strand, 16091696 - 16091978
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| ||||||||||||||| |||||| |||  ||| ||||||||||||     
T  16091696 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaggaaggccttagtacctttaaaagaagcca 16091795  T
Q  158 aagggccccgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggggg 256  Q
    ||  ||||  |||||||||||       ||||||  | ||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||       
T  16091796 aaaagcccaaggcgcgcattattatatcgccgccatactaaatctctagaaacttctagaaaccgccc-taaatacataaataaccctattacttggata 16091894  T
Q  257 ctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||||| |||| | ||||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||| ||||||||||    
T  16091895 ctaagcaaccaagacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataaccagtctaaaa 16091978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 340
Target Start/End: Original strand, 16082559 - 16082802
Alignment:
Q  97 aagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcgcgcattacccccgtgccgcctcaat 196  Q
    ||||||||||||||| ||||||||||||||| |||||| |||  ||| |||||||||||| ||  ||||  |||||||||||       ||||||  | |    
T  16082559 aagacctccaaaaggacttttagacccctcaggaaggccttagtacctttaaaagaagccaaaaagcccaaggcgcgcattattatatcgccgccatact 16082658  T
Q  197 aa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacat 295  Q
    || ||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||   ||||| |||| | ||||||||||||||||||||| | ||    
T  16082659 aaatctctagaaacttctagaaactgccc-taaatacataaataaccctattacttggaaactaagcaaccaagacccaagcccatagaaggctataaat 16082757  T
Q  296 accacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||||||||| | || |||||||||||| ||||| ||||||||||    
T  16082758 accacccttgagaacactctcaagtatctaataaccagtctaaaa 16082802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 103531 - 103403
Alignment:
Q  211 tctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggac 310  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||| |||| |||||||||||||| |||||||| | |||||| ||||| | ||    
T  103531 tctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatggaaggctataaataccatccttgagaac 103433  T
Q  311 cctctcaagtatccaataatcagtctaaaa 340  Q
     |||||||||||| ||||||||||||||||    
T  103432 actctcaagtatctaataatcagtctaaaa 103403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 15417672 - 15417786
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||  || | ||||||||||||||||||| ||| ||||      
T  15417672 gtggaccgtcataatattcctaaggaactgaaagacctccaaaagggcttttagatccctcaaacagtccttaacacccttaaaagaag-ccatgggctg 15417770  T
Q  166 cgggcgcgcattaccc 181  Q
    ||||||||||||||||    
T  15417771 cgggcgcgcattaccc 15417786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 339
Target Start/End: Original strand, 18556648 - 18556777
Alignment:
Q  209 cttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttgggg 308  Q
    ||||||||||||||||  |||  | |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| | |||||||||||| |     
T  18556648 cttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaataccacccttgaga 18556746  T
Q  309 accctctcaagtatccaataatcagtctaaa 339  Q
    || ||||||||||||||||| ||||||||||    
T  18556747 acactctcaagtatccaatattcagtctaaa 18556777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 14561217 - 14561073
Alignment:
Q  194 aataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacac 293  Q
    ||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||| |  |||| |||| ||||||||| ||||||||||||| |     
T  14561217 aataatctctaaaatcttctagaaaccgcca-taaatacgtaaatacccctattacttggagaataagcaaccaaaacccaagtccatagaaggctataa 14561119  T
Q  294 ataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||||||| | | || |||||||| ||| ||| |||||||||||    
T  14561118 ataccaccctcgagaacactctcaaggatcgaatgatcagtctaaa 14561073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 339
Target Start/End: Complemental strand, 8857102 - 8856960
Alignment:
Q  187 ccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaag 286  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||| |||| |||| ||||| ||     
T  8857102 ccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaaccaaaactcaag-ccatataa- 8857006  T
Q  287 gctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
           |||||||||||| | || ||||||||||||||||| ||||||||||    
T  8857005 -------ataccacccttgagaacactctcaagtatccaatattcagtctaaa 8856960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 339
Target Start/End: Complemental strand, 14566397 - 14566257
Alignment:
Q  198 atctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatac 297  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||| |  |||| |||| ||||||||| ||||||||||||| | ||||    
T  14566397 atctctaaaatcttctagaaaccgcca-taaatacgtaaatacccctattacttggagaataagaaaccaaaacccaagtccatagaaggctataaatac 14566299  T
Q  298 cacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||||| | ||  ||||||| ||| ||| |||||||||||    
T  14566298 cacccttgagaacaatctcaaggatcgaatgatcagtctaaa 14566257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 305
Target Start/End: Complemental strand, 10777131 - 10776903
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||   ||||||  |||||    
T  10777131 tggaccgtcataatattcctaaggacctaaaa-acctccaaaagggcttcttagacctctcaagaaggccttaacacccttaaagagagcccataggccc 10777033  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      |||||||| ||  |   | ||||||  | |||||          ||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||    
T  10777032 aaggcgcgcactagtcagatcgccgccatactaatc----------tctagaaacc-accctaaatacataaatacccctattacttggaggctaagcaa 10776944  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttg 305  Q
    || |  ||||||||||||||||| || | ||||||||||||    
T  10776943 ccaaggcccaagcccatagaaggttataaataccacccttg 10776903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 26900724 - 26900595
Alignment:
Q  209 cttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttgggg 308  Q
    ||||||||||||||||  |||  | |||||||||||||||||||  | ||||| |||| |||| ||||||||||||| |||| | |||||||||||| |     
T  26900724 cttctagaaaccgccca-aaaggcctaaatacccctattacttgaagactaagcaaccaaaactcaagcccatagaaagctataaataccacccttgaga 26900626  T
Q  309 accctctcaagtatccaataatcagtctaaa 339  Q
    || ||||||||||||||||| ||||||||||    
T  26900625 acactctcaagtatccaatattcagtctaaa 26900595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 15417788 - 15417862
Alignment:
Q  268 aaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||||||||||| || | |||||||||||| | || ||||||||||||||||| |||||||||||||    
T  15417788 aaacccaagcccatagaaggttataaataccacccttgagaacactctcaagtatccaatagtcagtctaaaacc 15417862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 103667 - 103583
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaa 150  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||| |||||||| || ||| ||||||| |||    
T  103667 gtggaccgtcataatattcctaagga-cttaaagacctccaaaagggcttcttagacctctcaagaaagccttagcacccttgaaa 103583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26900849 - 26900791
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||    
T  26900849 gtggaccgtcataatattcctaaggacctaagagacctccaaaagggcttcttagaccc 26900791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 18556524 - 18556581
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||| ||||||||    
T  18556524 tggaccgtcataatattcctatggacctaaaagacctccaaaagggcttcttagaccc 18556581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 26907452 - 26907395
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||    
T  26907452 tggaccgtcataatattcctaaggacctaagagacctccaaaagggcttcttagaccc 26907395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 26907280 - 26907204
Alignment:
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||| |||||||||||||||||| |||| | ||||||| |||| | || ||||||||||||||||  ||||||||||    
T  26907280 aaccaaaacccaagcccatagaaagctataaataccactcttgagaacactctcaagtatccaattttcagtctaaa 26907204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 8854335 - 8854288
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggc 113  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  8854335 gtggaccgtcataatattcctaaggacctaaaagaccttcaaaagggc 8854288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 51199114 - 51199168
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctcca-aaagggcttttaga 120  Q
    |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||    
T  51199114 tggaccgtcataatattcctaaggacctaaaagatctccagaaagggcttttaga 51199168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 10497497 - 10497554
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagaccc 123  Q
    |||||||||||  |||||| | ||||||| |||||||||||||| |||||||||||||    
T  10497497 gtggaccgtcaatatattcctgaggacctaaaagacctccaaaaaggcttttagaccc 10497554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 15926858 - 15926755
Alignment:
Q  201 tctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccac 300  Q
    ||||||| | |||||||||||||   ||||||  |||||||| | || ||||||| | ||| |||| |||||||||||||||| |||||| | |||||||    
T  15926858 tctagaaacctctagaaaccgccta-aaatacgcaaatacccatgttgcttggggaccaagcaaccaaaacccaagcccatagcaggctataaataccac 15926760  T
Q  301 ccttg 305  Q
    |||||    
T  15926759 ccttg 15926755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 14566530 - 14566451
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacaccctt 146  Q
    |||||||||| ||||||| ||| ||| | ||||||||| ||| |||||| ||||||| ||||||||||| ||| |||||||    
T  14566530 tggaccgtcacaatattcctaaagactt-aaagacctctaaaggggcttcttagacctctcaagaaggccttagcaccctt 14566451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 21938468 - 21938745
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||    
T  21938468 gtggaccgtcataatgttcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaatacctttaaaagaatcccaagggccc 21938567  T
Q  166 cgggcgcgcattacccccgtg-ccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||||||||||| ||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||    
T  21938568 cgggcgcgcattatccatggcaccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccccattacttggagactaagcaa 21938667  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||| ||||||||||||||||||| | |||||||||||| | || |||||| ||||| ||||||||||||||||||    
T  21938668 ccgaaatccaagcccatagaaggctataaataccacccttgagaacactctcaggtatctaataatcagtctaaaacc 21938745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 67 - 290
Target Start/End: Original strand, 21935959 - 21936183
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  21935959 tggactgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaatacctttaaaagaagcccaagggcccc 21936058  T
Q  167 gggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    |||| ||||||| ||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||    
T  21936059 gggcacgcattatccatggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaac 21936158  T
Q  266 cgaaacccaagcccatagaaggcta 290  Q
    ||||||||||| |||||||||||||    
T  21936159 cgaaacccaagtccatagaaggcta 21936183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 31708764 - 31709044
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||| |||||| |||| |||||  |||||| |||||||||| ||| ||||||||||||| | || |||| |||    
T  31708764 tggaccgtcataatattcctaaggacctgaaggacctctaaaaaggcttaaagacccgtcaagaaggctttagcacccttaaaagatgtcctagggtccc 31708863  T
Q  167 gggcgcgcattacccccgtg---ccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
     |||||| | || ||  |||   |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  31708864 aggcgcgtactatcc--gtggcaccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagca 31708960  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||| |||||||||||||| |||| ||| | |||||||||||| | || |||||||||||| |||||||||||||||||| ||||    
T  31708961 accaaaacccaagcccattgaagactataaataccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagt 31709044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 31710983 - 31711264
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||| ||||||||||| |||||||||||| |||||| ||||  ||||  |||||| |||||||||| ||| ||||||||||||||| || |||| ||    
T  31710983 gtggaccatcataatattcctaaggacctgaaggacctctaaaaatgcttaaagacccgtcaagaaggctttagcacccttaaaagaagtcctagggtcc 31711082  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    | |||| ||  || ||  |  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  31711083 caggcgtgcgctatccgtggcgccgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaa 31711181  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    || |||||||||| ||| |||||||| | |||||||||||| | || |||||||||||| |||||||||||||||||| ||||    
T  31711182 ccaaaacccaagctcattgaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagt 31711264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 21834680 - 21834951
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||   ||||||| ||||    
T  21834680 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagacccctcaaaaaggccttagcacccttaaagagagcccaaaggcc 21834779  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatc-tctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    |  |||||| ||| |||   | ||||||| | ||| | ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| | |||||     
T  21834780 caaggcgcgtatttcccagagagccgccttactaaacctctagaaccttctagaaaccgccc-taaatacctaaatacccctattacttggagactaagc 21834878  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtc 335  Q
    |||||||||||||||||||||||||||| | |||||||||||| | || ||||||||||||||||| ||||||    
T  21834879 aaccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaatattcagtc 21834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 14366000 - 14366275
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || |||||     
T  14366000 tggaccgtcataatattcctaaggacctgaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggccca 14366099  T
Q  167 gggcgcgcattacccccgtgccgcctcaat-aatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
     ||||||||||| |     ||||||  | | ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| |||    
T  14366100 aggcgcgcattatcatatcgccgccatactaaatctctagaaacttctagaaaccg-ccctaaatacacaaatacccctattacttggagactaagcaac 14366198  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    | ||| ||||||||||| ||||||| | |||||||||||| | || |||||||||||  ||||| ||||| ||||||    
T  14366199 caaaatccaagcccatataaggctataaataccacccttgagaacactctcaagtatgtaataaacagtcaaaaacc 14366275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 340
Target Start/End: Complemental strand, 20135209 - 20134936
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || ||||     
T  20135209 gtggactgtcataatattcctaaggacctgaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcct 20135110  T
Q  166 cgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||| |     ||||||  | ||| |||||||||  ||||| ||||||||| ||||||||||||||||||||||| |||| | ||||| ||    
T  20135109 aaggcgcgcattatcatatcgccgccatactaaatctctagaaatttctataaaccgccc-taaatacataaatacccctattatttggagactaagcaa 20135011  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    || | ||||||||||||||||||||| | ||||||||||| | || | ||||||||||| ||||||||||||||||    
T  20135010 ccaagacccaagcccatagaaggctataaataccaccctt-gagaacatctcaagtatctaataatcagtctaaaa 20134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 14370131 - 14370415
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| |||  ||| ||||||||||||     
T  14370131 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagcca 14370230  T
Q  158 aagggccccgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggggg 256  Q
    || |||||  ||||||||||| |     ||||||  | ||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |     
T  14370231 aaaggcccaaggcgcgcattatcatatcgccgccatactaaatctctagaaacttctagaaaccgccc-taaatacacaaatacccctattacttggaga 14370329  T
Q  257 ctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||| |||| ||| ||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||| ||||| ||||||    
T  14370330 ctaagcaaccaaaatccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataaacagtcaaaaacc 14370415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 14369580 - 14369864
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| |||  ||| ||||||||||||     
T  14369580 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagcca 14369679  T
Q  158 aagggccccgggcgcgcattacccccgtgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggggg 256  Q
    || ||||   ||||||||||| |     ||||||  | ||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |     
T  14369680 aaaggcctaaggcgcgcattatcatatcgccgccatactaaatctctagaaacttctagaaaccgccc-taaatacacaaatacccctattacttggaga 14369778  T
Q  257 ctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||| |||| ||| ||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||| ||||| ||||||    
T  14369779 ctaagcaaccaaaatccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataaacagtcaaaaacc 14369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 21408227 - 21408488
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||   |||  || ||||    
T  21408227 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagacccctcaaaaaggccttagcacccttaaagagagcttaaaggcc 21408326  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||| ||| |||   | ||||||| | ||| |          |||||||||||||| ||||||| |||||||||||||||||||| | ||||| |    
T  21408327 caaggcgcgtatttcccagagagccgccttactaaacc---------tctagaaaccgccc-taaatacctaaatacccctattacttggagactaagca 21408416  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtc 335  Q
    ||||||||||||||||||||||||||| | |||||||||||| | || ||||||||||||||||| ||||||    
T  21408417 accgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaatattcagtc 21408488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 21802719 - 21802980
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||   |||  || ||||    
T  21802719 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagacccctcaaaaaggccttagcacccttaaagagagcttaaaggcc 21802818  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||| ||| |||   | ||||||| | ||| |          |||||||||||||| ||||||| |||||||||||||||||||| | ||||| |    
T  21802819 caaggcgcgtatttcccagagagccgccttactaaacc---------tctagaaaccgccc-taaatacctaaatacccctattacttggagactaagca 21802908  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtc 335  Q
    ||||||||||||||||||||||||||| | |||||||||||| | || ||||||||||||||||| ||||||    
T  21802909 accgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaatattcagtc 21802980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 340
Target Start/End: Complemental strand, 20132084 - 20131812
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| |||  ||| ||||||||||||     
T  20132084 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagcca 20131985  T
Q  158 aagggccccgggcgcgcattacccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggc 257  Q
    || ||||   ||||||||||| |     ||||||   |||    ||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| | |    
T  20131984 aaaggcctaaggcgcgcattatcatatcgccgcc---ata----cta-aatct-ctagaaaccgccc-taaatacataaatacccctattatttggagac 20131895  T
Q  258 taagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||| |||| | ||||||||||||||||| ||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  20131894 taagcaaccaagacccaagcccatagaagactataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 20131812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 14676564 - 14676702
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||||| |||||| ||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  14676564 ctctagaaccttctagaaaccgccca-aaatacctaaatatccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 14676662  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||  | || ||||||||||||||||| ||||| ||||    
T  14676663 cccttcagaacactctcaagtatccaatattcagtataaa 14676702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 14673358 - 14673496
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||||| |||||| ||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  14673358 ctctagaaccttctagaaaccgccca-aaatacctaaatatccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 14673456  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||  | || |||||| |||||||||| ||||| ||||    
T  14673457 cccttcagaacactctcaggtatccaatattcagtataaa 14673496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 3303184 - 3303289
Alignment:
Q  234 taaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcag 333  Q
    |||||||||||||||||||| |  |||| ||||  ||||||||| |||||||||||| | ||||||| |||| | || ||||||||||||||||| ||||    
T  3303184 taaatacccctattacttggagattaagcaaccacaacccaagctcatagaaggctataaataccacacttgagaacactctcaagtatccaatattcag 3303283  T
Q  334 tctaaa 339  Q
    ||||||    
T  3303284 tctaaa 3303289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 3300085 - 3300222
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    ||||||||  |||||||||||||||  |||  | ||||||||| |||||||||| | ||||| |||| |||||||||||||||||||  || | ||||||    
T  3300085 ctctagaactttctagaaaccgccca-aaaggcctaaataccc-tattacttggagactaagcaaccaaaacccaagcccatagaagagtataaatacca 3300182  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || ||  ||||||||||||| ||||||||||    
T  3300183 cccttgagaacacttccaagtatccaatattcagtctaaa 3300222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 36281427 - 36281289
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||| | |||||  |||||| |||||||||||||||||||| | ||||| || | ||||||||||||||||| ||||| | ||| ||    
T  36281427 ctctagaaccttctagagatcgccca-aaatacctaaatacccctattacttggagactaagcaatcaaaacccaagcccatagagggctataaatatca 36281329  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||||| | ||  ||| |||||||||||    
T  36281328 cccttgagaacactctcaggcatggaattatcagtctaaa 36281289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 14673223 - 14673271
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14673223 tggaccgtcataatattcctaaggacctaaaagacctccaaaagggctt 14673271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 16907219 - 16907111
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| ||||||| |||| |||||| |||| || ||  |||||| |||||||||  |||  |||||||||||||| || |||| |||    
T  16907219 tggaccgtcataatattcctaaggacttgaaggacctctaaaaaggtttaaagacccgtcaagaaggatttaggacccttaaaagaagtcctagggtccc 16907120  T
Q  167 gggcgcgca 175  Q
     ||||||||    
T  16907119 aggcgcgca 16907111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 3299960 - 3300017
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||| ||||||||    
T  3299960 tggaccgtcataatattcctatggacctaaaagacctccaaaagggcttcttagaccc 3300017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 36281563 - 36281514
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  36281563 gtggaccgtcataatattcctaaggatctaaaagacctccaaaagggctt 36281514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 3303025 - 3303083
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| || |||||| |||||| ||||||||||||| ||||||||    
T  3303025 gtggaccgtcataatattcatatggacctaaaagacttccaaaagggcttcttagaccc 3303083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 14676430 - 14676471
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaa 107  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  14676430 gtggaccgtcataatattcctaaggacctaaaagacctccaa 14676471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 16077919 - 16077856
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||| | || |||||  || ||| ||||||||||||||||||||| ||||||    
T  16077919 aaatacataaatacccatgttgcttggaagccaagcaaccgaaacccaagcccatagcaggcta 16077856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 17526726 - 17526671
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccata 282  Q
    |||||||||||||||||| || |||||| || ||| ||||||||||||||| ||||    
T  17526726 aaatacataaatacccctgttgcttgggagccaagcaaccgaaacccaagctcata 17526671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 37718125 - 37718180
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccata 282  Q
    |||||||||||||||||| || |||||| || ||| ||||||||||||||| ||||    
T  37718125 aaatacataaatacccctgttgcttgggagccaagcaaccgaaacccaagctcata 37718180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 20813 - 20531
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||    
T  20813 gtggaccgtcataatattcctaaggacctgaaagacctccacaagggcttttagacccttcaagaaggccttaatacctttaaaagaagcccaagggccc 20714  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||||| ||||| ||  |  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||| ||    
T  20713 cgggcgcacattatccatggcgccgcctcaataatctctagaatcttctagagaccgcccctaaatacataaataccgctattacttggagactaagcaa 20614  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    |||||||||||||||||||||||||| | |||||||||||| | || | |||| ||||| |||||||||||||||||| ||||    
T  20613 ccgaaacccaagcccatagaaggctataaataccacccttgagaacaccctcaggtatctaataatcagtctaaaaccttagt 20531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 40936458 - 40936735
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||     
T  40936458 gtggaccgtcataatattcctaaggacctgaaagaccttcaaaagggcttttagacctctcaagaaggccttaacacccttaaaagaagcc-atgggcct 40936556  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    ||||||||||||| || ||  ||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||||| ||||||| |    
T  40936557 cgggcgcgcattatccgcggcgccgcctcaataaatctctagaatcttctagaaatcgcctataaatacataaatacccctattacttggaggctaagca 40936656  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||  ||||||||||||||||||||||| | |||||||||||| | ||  ||||||||||||||||||||||||||||||    
T  40936657 acaaaaacccaagcccatagaaggctataaataccacccttgagaacagtctcaagtatccaataatcagtctaaaacc 40936735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 40933064 - 40933340
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |    
T  40933064 tggaccgtcataatattcctaaggacctgaaagaccttcaaaagggcttttagacccctcaagaaggccttaacacccttaaaagaagcc-atgggcctc 40933162  T
Q  167 gggcgcgcattacccccgt-gccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||||||||||| || ||  ||||||||||||| ||||||||| |||||| ||| ||||  |||||||||||||||||||||||||||| ||||||| ||    
T  40933163 gggcgcgcattatccgcggcgccgcctcaataaatctctagaaacttctaaaaatcgcctataaatacataaatacccctattacttggaggctaagcaa 40933262  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    || ||||||||||||||||||||||| | |||||||||||| | || |||| ||||||||||||||||||||||||||    
T  40933263 ccaaaacccaagcccatagaaggctataaataccacccttgagaacactcttaagtatccaataatcagtctaaaacc 40933340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 66 - 339
Target Start/End: Complemental strand, 26857712 - 26857438
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||    
T  26857712 gtggaccgtcataatattcctaaggaactgaaagacctccaaaagggcttcttagacccctcaagaaggccttagcacccttaaaaagagcccaagggcc 26857613  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  ||||||||||||||   |  |||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |  |||| |    
T  26857612 caaggcgcgcattacccatagcaccgccttaataatctctagaatcttctagaaaccgccc-taaatacctaaatccccctattacttggagattaagca 26857514  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    ||| ||||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||| ||||||||||    
T  26857513 accaaaacccaagcccatagaaggctataaataccacccttgaggacactctcaagtatccaatattcagtctaaa 26857438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 67 - 318
Target Start/End: Complemental strand, 26863944 - 26863702
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||  |||||||||||||    
T  26863944 tggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttcttagacccttcaagaaggccttagcacccttaaaaagagcccaagggccc 26863845  T
Q  166 cgggcgcgcattaccc-ccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||||||   | |||||||          ||||||||||||||||||| |||||||||| |||||||||||||||||||| |  |||| ||    
T  26863844 aaggcgcgcattacccatagcgccgcct----------tagaatcttctagaaaccg-ccctaaatacctaaatacccctattacttggagattaagcaa 26863756  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaa 318  Q
    || ||||||||||||||||||||||| | |||||||||||| |||| |||||||    
T  26863755 ccaaaacccaagcccatagaaggctataaataccacccttgaggacactctcaa 26863702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 32965632 - 32965819
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||| ||||||| |||||| |||| |||||| |||||| |||||||||| ||| |||||||| ||||||||| |||| ||    
T  32965632 gtggaccgtcataatattcctaagaacctgaaggacctctaaaatggctttaagacccgtcaagaaggctttagcacccttagaagaagccctagggtcc 32965731  T
Q  166 cgggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgg 253  Q
    ||||||||||||| ||   | ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32965732 cgggcgcgcattatccgtggcgccgccttaataatctctagaatcttctagaaaccg-ccctaaatacataaatacccctattacttgg 32965819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 8460025 - 8460301
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| ||||||||||  ||| ||||||| |||  || |  | ||||    
T  8460025 gtggaccgtcataatattcctaaggactt-aaagacctccaaaagggcttcttagacctctcaagaaggtcttagcacccttgaaaagagtcatatggcc 8460123  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||||  |||||   | ||||||  ||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||| |    
T  8460124 caaggcgcgctctacccatagcgccgccataatgatctttagaatcttctagaaaccaccc-taaatacataaatacccctattacttggagactaagaa 8460222  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||| ||||||||||||||||||||||| | |||||||||||| | || ||||||  ||||||||||| |||||||||||    
T  8460223 accaaaacccaagcccatagaaggctataaataccacccttgagaacactctcagatatccaataatgagtctaaaacc 8460301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 19049967 - 19049912
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacc 122  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  19049967 tggaccgtcataatattcctaaggacctaaaagacctccaaaagggattttagacc 19049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 347
Target Start/End: Complemental strand, 20680274 - 20680153
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaa-gtatcca 325  Q
    ||||||||||||||||||  | |||||| || ||| ||||||||||||||||||||| |||||| | |||| || |||| |  |  |||||| | |||||    
T  20680274 aaatacataaatacccctgctgcttgggagccaagcaaccgaaacccaagcccatagcaggctataaatactactcttgagatcattctcaaggcatcca 20680175  T
Q  326 ataatcagtctaaaaccatagt 347  Q
    ||||||||||||||||| ||||    
T  20680174 ataatcagtctaaaaccctagt 20680153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 38836749 - 38836853
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||| | |||||  |||||| |||||||||||||||||||| | ||||| ||   ||||||||||||||||| ||||| | ||| ||    
T  38836749 ctctagaaccttctagagatcgccca-aaatacctaaatacccctattacttggagactaagcaataaaaacccaagcccatagagggctataaatatca 38836847  T
Q  300 cccttg 305  Q
    ||||||    
T  38836848 cccttg 38836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 38840532 - 38840581
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  38840532 gtggaccgtcataatattcctaaggatctaaaagacctccaaaagggctt 38840581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 38836614 - 38836662
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||    
T  38836614 tggaccgtcataatattcctaaggatctaaaagacctccaaaagggctt 38836662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 20817269 - 20817323
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagac 121  Q
    ||||||||||  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  20817269 tggaccgtcaatatattcctaaggacctgaaagatctccagaagggcttttagac 20817323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 20675186 - 20675131
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccata 282  Q
    ||||||||||||||||||  | |||||| || ||| ||||||||||||||||||||    
T  20675186 aaatacataaatacccctgctgcttgggagccaagcaaccgaaacccaagcccata 20675131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 18433048 - 18433323
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  18433048 gtggaccgtcataatattcctaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggccttaatacctttaaaagaagcccaagggccc 18433147  T
Q  166 cgggcgcgcattacccccg-tgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    ||||||| ||||| ||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||    
T  18433148 cgggcgcacattatccatgacgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaataaccctattacttggagactaagcaa 18433247  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||| |||||||||||||||||| ||| | ||||||||  || | || |||||| ||||| |||||| |||||||||||    
T  18433248 ccggaacccaagcccatagaagactataaataccacc--tgagaacactctcaggtatctaataattagtctaaaacc 18433323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 19751602 - 19751871
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||| ||| ||||||||||   ||||||| |||||    
T  19751602 gtggaccgtcataatattcctaaggacctgaaagacctccaaaaggcttcttagacccctcaagaaggccttagcacccttaaagagagcccaaaggccc 19751701  T
Q  166 cgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||||||   | ||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  19751702 aaggcgcgcattacccatagcgccgccatactaatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagaaa 19751800  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtc 335  Q
    || | ||||||||||||||||||||| | |||||||| ||| | || ||||| ||||||||||| ||||||    
T  19751801 ccaagacccaagcccatagaaggctataaataccacctttgagaacactctcgagtatccaatattcagtc 19751871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 65 - 335
Target Start/End: Original strand, 19749375 - 19749645
Alignment:
Q  65 agtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||| ||| ||||||||||   ||||||| ||||    
T  19749375 agtggaccgtcataatattcctaaggacctgaaagacctccaaaaggcttcttagacccctcaagaaggccttagcacccttaaagagagcccaaaggcc 19749474  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  ||||||||||||||   | ||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  19749475 caaggcgcgcattacccatagcgccgccatactaatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagca 19749573  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtc 335  Q
    ||| | ||||||||||||||||||||| | |||||||| ||| | || ||||| |||||| |||| ||||||    
T  19749574 accaagacccaagcccatagaaggctataaataccacctttgagaacactctcgagtatctaatattcagtc 19749645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 66 - 340
Target Start/End: Complemental strand, 12020499 - 12020225
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    |||||||||||||| |||| ||||||| | || ||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||  ||||  | ||||    
T  12020499 gtggaccgtcataaaattcctaaggactttaa-gacctccaaaagggcttcttagacctctcaagaaggccttagcacccttaaaaagagccataaggcc 12020401  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||||  |||||   | || |||  ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  12020400 caaggcgcgctctacccatagcgctgccataatgatctctagaatattctagaaaccgccc-taaatacataaatacccctattacttggagactaagca 12020302  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||||||||||||||||||||||||||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  12020301 accgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 12020225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 340
Target Start/End: Original strand, 20514227 - 20514501
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || |||||    
T  20514227 gtggaccgtcataatattcctaaggacctaaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggccc 20514326  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      ||||||||||| ||   | ||  ||  | |||||||||||| ||||||||| ||| |||||||||| ||||| ||||||||||||||    |||| ||    
T  20514327 aaggcgcgcattatccatatcgctaccatactaatctctagaaacttctagaagccg-ccctaaatacttaaatgcccctattacttggaaagtaagcaa 20514425  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    || |||||||||| |||||||||||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  20514426 ccaaaacccaagctcatagaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 20514501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 340
Target Start/End: Original strand, 20442358 - 20442640
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa---------aagggcttttagacccctcaagaaggcgttaacacccttaaaagaagccc 157  Q
    |||||||||||||||||| ||||||||||||||||||||||         |||| |||||||||||||||||||||| |||  ||| ||||||||||||     
T  20442358 tggaccgtcataatattcctaaggacctgaaagacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagcca 20442457  T
Q  158 aagggccccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggggg 256  Q
    || |||||  ||||||||||| ||   | || |||  | |||||||||||| ||||||||| |||||| ||||||| ||||| ||||||||||||||       
T  20442458 aaaggcccaaggcgcgcattatccatatcgctgccatactaatctctagaaacttctagaagccgccc-taaatacttaaatgcccctattacttggaaa 20442556  T
Q  257 ctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||||| |||| |||||||||| |||||||||||| | |||||||||||| | || |||||||||||| ||||||||||||||||    
T  20442557 ctaagcaaccaaaacccaagctcatagaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 20442640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 24277103 - 24276822
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||| | ||||||||||| ||| ||||||| |||  ||||    ||||    
T  24277103 gtggaccgtcataatattcctaaggactt-aaagacctccaaaagggcttcttagatctctcaagaaggccttagcacccttgaaaagagccatgaggcc 24277005  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  |||||||  |||||   | ||||||  ||| |||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||| | ||||| |    
T  24277004 caaggcgcgctctacccatagcgccgccataatgatctctcgaatcttctaaaaaccgccc-taaaaacataaatacccctattacttggagactaagca 24276906  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||| |||||||| |||||||||||||| | |||||||||||| | || |||||||||||| |||||||||||| ||||| ||||    
T  24276905 accaaaacccaaacccatagaaggctataaataccacccttgagaacactctcaagtatcgaataatcagtcttaaaccctagt 24276822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 64 - 347
Target Start/End: Complemental strand, 24281218 - 24280935
Alignment:
Q  64 aagtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacacccttaaaagaagcccaaggg 162  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||| || ||||||| ||||||||||| ||| ||||||| |||  ||||    ||    
T  24281218 aagtggaccgtcataatattcctaaggactt-aaagacctccaaaagggtttcttagacctctcaagaaggccttagcacccttgaaaagagccatgagg 24281120  T
Q  163 ccccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaag 261  Q
    |||  || ||||  |||||   | ||||||  ||| |||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||| | |||||    
T  24281119 cccaaggtgcgctctacccatagcgccgccataatgatctctagaatcttctggaaactgccc-taaaaacataaatacccctattacttggagactaag 24281021  T
Q  262 taaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
     |||| ||||||||||||||||||||||| | ||| |||||||| | || || ||||||||| |||||||||||| ||||| ||||    
T  24281020 caaccaaaacccaagcccatagaaggctataaatatcacccttgagaacactttcaagtatcgaataatcagtcttaaaccctagt 24280935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 15158215 - 15158077
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||||||||||   |||  | ||||| |||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  15158215 ctctagaaccttctagaaaccgccga-aaaggcctaaattcccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 15158117  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||||||||||||||||  |||||||||    
T  15158116 cccttgagaacactctcaagtatccaatatacagtctaaa 15158077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 15142789 - 15142651
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||| ||  |||  | ||||||||| |||||||||| | ||||| |||| ||||||||||||||||||||||| | ||||||    
T  15142789 ctctagaaccttctagaaaccgtcca-aaaggcctaaatacccttattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacca 15142691  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||| ||||||||||||  |||||||||    
T  15142690 cccttgagaacactcttaagtatccaatatacagtctaaa 15142651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 20435370 - 20435270
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||||||||||||||| |||  ||||||| ||||||||  |||||||||| | ||||| |||  ||||||||||||||||||||||| | ||||||    
T  20435370 ctctagaatcttctagaaacagcca-taaatacctaaatacctttattacttggagactaagcaactaaaacccaagcccatagaaggctataaatacca 20435272  T
Q  300 cc 301  Q
    ||    
T  20435271 cc 20435270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 20435505 - 20435457
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggct 114  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  20435505 gtggaccgtcataatattcctaaggacctaaaagacctccaaaagggct 20435457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 36910744 - 36910665
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagacccctcaagaaggcgttaacaccctt 146  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||| ||||| ||||| ||| |||||||    
T  36910744 tggaccgtcataatattcctaag-accttaaagacctccaaaagggcttcttagacctctcaaaaaggctttagcaccctt 36910665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 36910612 - 36910514
Alignment:
Q  198 atctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatac 297  Q
    ||||||||||||||||||||||||||      |||| ||||||||||||||||||||| ||||| |||| |||| ||||||||   ||||||| | ||||    
T  36910612 atctctagaatcttctagaaaccgcct-----tacacaaatacccctattacttggggactaagcaaccaaaactcaagcccacgaaaggctataaatac 36910518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 15158340 - 15158292
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||| || |||||| ||||||||||||||||||||    
T  15158340 tggaccgtcataatattcctatggacctaaaagacctccaaaagggctt 15158292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 15142915 - 15142869
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaaggg 112  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||    
T  15142915 gtggaccgtcataatattcctatggacctaaaagacctccaaaaggg 15142869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 11884 - 12159
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  | |||||||||||| ||||||| ||||||||    
T  11884 tggaccgtcataatattcctaaggacctgaaagacctcaaaaagggcttttagacccctcaagaaggtctaaacacccttaaaggaagccctagggcccc 11983  T
Q  167 gggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    ||||||| ||||  | ||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||    
T  11984 gggcgcgtattattcacggcgtcgcctcaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaac 12082  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||| ||||||||||||||||||| | |||||| |||||   || ||||||  |||||||||||||||||||||||    
T  12083 cgaaatccaagcccatagaaggctataaataccatccttgaacacactctcagatatccaataatcagtctaaaacc 12159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 68 - 342
Target Start/End: Original strand, 23882218 - 23882493
Alignment:
Q  68 ggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccg 167  Q
    ||||||||||||||||| ||| ||||| ||||||||||  |||||| | |||||||||||||||||| |||| ||| |||||||| ||||||||||||||    
T  23882218 ggaccgtcataatattcctaaagaccttaaagacctccggaagggcgtctagacccctcaagaaggccttaataccattaaaagaggcccaagggccccg 23882317  T
Q  168 ggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaacc 266  Q
    ||||||||||| ||  |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  23882318 ggcgcgcattatccatggcgccgcctcaataatctttagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagtctaagcaacc 23882417  T
Q  267 gaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||||||||||||||| | ||||||||||||   || |||||| |||||||||| ||| |||||||||    
T  23882418 gaaacccaagcccatagaaggctataaataccacccttgacaacactctcaggtatccaatagtcaatctaaaacc 23882493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 70 - 347
Target Start/End: Original strand, 27788911 - 27789190
Alignment:
Q  70 accgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccggg 169  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| |||||  ||||||||||||| | |||| ||||||||||||||| ||||||   ||    
T  27788911 accgtcataatattcctaaggacctgaaaggcctccaaaagggcatttagttccctcaagaaggcctaaacatccttaaaagaagccccagggccttagg 27789010  T
Q  170 cgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccga 268  Q
     |||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| ||||||    
T  27789011 agcgcattacccatggcgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatagccttattacttggagactaagcaaccga 27789110  T
Q  269 aacccaagcc-catagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||||||||||  | | ||||||| | |||||||||||| | || ||||||||||||||||||||||||||||||| ||||    
T  27789111 aacccaagcctaaaaaaaggctataaataccacccttgagaacactctcaagtatccaataatcagtctaaaaccctagt 27789190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 23878568 - 23878844
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| ||| ||||| |||||| |||  |||||| | |||||||||||||||||| |||| ||| |||||||| ||||||||||||    
T  23878568 gtggaccgtcataatattcctaaagaccttaaagacatccggaagggcgtctagacccctcaagaaggccttaataccattaaaagaggcccaagggccc 23878667  T
Q  166 cgggcgcgcattacccccgtg-ccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||| |||||||| ||  |   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||| ||    
T  23878668 cgggtgcgcattatccatggcaccgcctcaataatctctagaatcttctagaaaccgcctctaaatacataaatacccttattacttggagactaagcaa 23878767  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||||||||| ||||||| |||| | |||||||||||| | ||  ||||| |||||||||| |||||||||||||    
T  23878768 ccgaaacccaagctcatagaa-gctataaataccacccttgagaacagtctcaggtatccaatagtcagtctaaaacc 23878844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 67 - 339
Target Start/End: Original strand, 10968593 - 10968866
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||| ||||||||| ||||||||| |||||||  |||||||||||  ||||||| |||||||||| ||| |||||||||||  ||||||| ||||     
T  10968593 tggaccgttataatattcctaaggacctaaaagaccctcaaaagggcttcctagacccttcaagaaggccttagcacccttaaaaagagcccaaaggccg 10968692  T
Q  166 cgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      |||||| |||||||   | ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  10968693 aaggcgcgtattacccatagcgccgccttaatagtctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaa 10968791  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    || ||||||||||||||||||||||| | |||||||||||| | || |||||||| |||||||| ||||||||||    
T  10968792 ccaaaacccaagcccatagaaggctataaataccacccttgagaacactctcaaggatccaatattcagtctaaa 10968866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 339
Target Start/End: Original strand, 10757100 - 10757374
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||| ||||| |||||||  |||||||||||  ||||||| |||||||||| ||| |||||||||||  ||||||| ||||    
T  10757100 gtggaccgtcataatattcctaaagacctaaaagaccctcaaaagggcttcctagacccttcaagaaggccttagcacccttaaaaagagcccaaaggcc 10757199  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
       |||||| |||||||   | ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| |    
T  10757200 gaaggcgcgtattacccatagcgccgccttaatagtctctagaatcttctagaaaccgccc-taaatacataaatacccatattacttggagactaagca 10757298  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    ||| ||||||||||||||||||||||||| |||||||||||| | || | |||||| |||||||| ||||||||||    
T  10757299 accaaaacccaagcccatagaaggctacaaataccacccttgagaacacactcaaggatccaatattcagtctaaa 10757374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 339
Target Start/End: Original strand, 10970271 - 10970545
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||| ||||| |||||||  |||||||||||  ||||||| |||||||||| ||| |||||||||||  ||||||| ||||    
T  10970271 gtggaccgtcataatattcctaaagacctaaaagaccctcaaaagggcttcctagacccttcaagaaggccttagcacccttaaaaagagcccaaaggcc 10970370  T
Q  165 ccgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
       |||||| |||||||   | ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| |    
T  10970371 gaaggcgcgtattacccatagcgccgccttaatagtctctagaatcttctagaaaccgccc-taaatacataaatacccttattacttggagactaagca 10970469  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    ||| ||||||||||||||||||||||||| |||||||||||| | || | |||||| |||||||| ||||||||||    
T  10970470 accaaaacccaagcccatagaaggctacaaataccacccttgagaacacactcaaggatccaatattcagtctaaa 10970545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 67 - 339
Target Start/End: Original strand, 10754824 - 10755097
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||| ||||||||| ||||||||| |||||||  |||||||||||  ||||||| |||||||||| ||| |||||||||||  ||||||| ||||     
T  10754824 tggaccgttataatattcctaaggacctaaaagaccctcaaaagggcttcctagacccttcaagaaggccttagcacccttaaaaagagcccaaaggccg 10754923  T
Q  166 cgggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
      |||||| |||||||   | ||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||    
T  10754924 aaggcgcgtattacccatagcgccgccttaatagtctctaaaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaa 10755022  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    || ||||||||||||||||||||||| | |||||||||||| | || |||||||| |||||||| ||||||||||    
T  10755023 ccaaaacccaagcccatagaaggctataaataccacccttgagaacactctcaaggatccaatattcagtctaaa 10755097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 30953185 - 30953248
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||||| || |||||| || ||| ||||||||||||||||||||| ||||||    
T  30953185 aaatacataaatacccctgttgcttgggagccaagcaaccgaaacccaagcccatagcaggcta 30953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 53993022 - 53993059
Alignment:
Q  86 taaggacctgaaagacctccaaaagggcttttagaccc 123  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  53993022 taaggacctaaaagacctccaaaaaggcttttagaccc 53993059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13563591 - 13563547
Alignment:
Q  79 atattcgtaaggacctgaaagacctccaaaagggcttttagaccc 123  Q
    |||||| ||||||||| ||||||||| | ||||||||||||||||    
T  13563591 atattcttaaggacctaaaagacctctagaagggcttttagaccc 13563547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 66 - 339
Target Start/End: Complemental strand, 3175 - 2901
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||     
T  3175 gtggaccgtcataatattcctaaggacctgaaggactttcaaaagggcttttagacccctcaagaaggccttaaaacccttaaaagaagccctagggcct 3076  T
Q  166 cgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaa 264  Q
    |||| ||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||    
T  3075 cgggtgcgcactacccacggcgccgcctcaataatctctagaatcttctagaaaccgccccaaaatacataaatacccctattacttggagactaagcaa 2976  T
Q  265 ccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| ||||||||||| ||||||| | ||||| |||||| | |  |||||  | ||| |||||||||||||||    
T  2975 ccgaaatccaagcccatacaaggctataaatacctcccttgagaagactctcgggcatcgaataatcagtctaaa 2901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 27353 - 27629
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| | |||||||||| |||||| ||||| ||||| |||||| |||||||| | ||| |||||||||||||||||| |||| ||    
T  27353 gtggaccgtcataatattcctgaggacctgaaggacctctaaaagagctttaagacccgtcaagaagactttagcacccttaaaagaagccctagggtcc 27452  T
Q  166 cgggcgcgcattacccccgtgcc---gcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||||||||||||| ||  ||| |   |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||    
T  27453 cgggcgcgcattatcc--gtggcactgccttaataatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggaaactaagt 27549  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||||||||||||||||||| | |||||| ||||| | || ||||||| ||||||||||||| |||||||||    
T  27550 aaccgaaacccaagcccatagaaggctataaataccatccttgagaacactctcaaatatccaataatcaatctaaaacc 27629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 24705 - 24970
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcccc 166  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||| |||||||||| ||| |||||||||||||||||| |||| |||    
T  24705 tggaccgtcataatattcctaaggacctgaaggacctctaaaagggctttaagacccgtcaagaaggctttagcacccttaaaagaagccctagggtccc 24804  T
Q  167 gggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaac 265  Q
    ||||| |||||| ||  |  || |||| ||||||||||||||          ||||||  ||||||||||||||||||||||||||||   |||||||||    
T  24805 gggcgtgcattatccatggcgctgccttaataatctctagaa----------accgcct-taaatacataaatacccctattacttggaaactaagtaac 24893  T
Q  266 cgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||||||||||||||||||||| | |||||||||||| | || |||||||||||||||||||||||||||||||    
T  24894 cgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaataatcagtctaaaacc 24970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 65 - 342
Target Start/End: Complemental strand, 10728 - 10451
Alignment:
Q  65 agtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||  | |||||||||||| ||||||| ||||||    
T  10728 agtggaccgtcataatattcctaaggacctaaaagacctccaaaagggcgtttagacccctcaagaaggtctaaacacccttaaaggaagccctagggcc 10629  T
Q  165 ccgggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    | ||||||| ||||  | | ||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||| |    
T  10628 ctgggcgcgtattattcacggtgtcggctcaataatctctagaatcttctagaaaccg-ccctaaatgcataaatacccctattacttggagactaagca 10530  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    ||||||| |||| |||||||||||| | | |||||| |||||   || ||||||  |||||||||||||||||||||||    
T  10529 accgaaatccaatcccatagaaggccataaataccatccttgaacacactctcagatatccaataatcagtctaaaacc 10451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 1786 - 1504
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttt-tagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||||||  |||||| ||||||||||| | ||||||||| |||  |||| |  ||||    
T  1786 gtggaccgtcataatattcctaaggactt-aaagacctccaaaagggcttcctagacctctcaagaaggcctcaacacccttgaaaagagccaagaggcc 1688  T
Q  165 ccg-ggcgcgcattaccccc-gtgccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    |   |||||||  |||||   | |||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||     
T  1687 caaaggcgcgctctacccatagcgccgtcataatgatctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagc 1589  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    ||||||||| |||||||||||||||||| | |||||||||||  | || |||||||||||| |||||||||||||||||| ||||    
T  1588 aaccgaaactcaagcccatagaaggctataaataccacccttaagaacactctcaagtatctaataatcagtctaaaaccctagt 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 146535 - 146811
Alignment:
Q  65 agtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggcc 164  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || ||||    
T  146535 agtggactgtcataatattcctaaggacctgaaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcc 146634  T
Q  165 ccgggcgcgcattacccccgtgccgcctcaat-aatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagta 263  Q
    |  ||||| ||||| |     ||||||  | | ||||||||||| ||||||||| ||  |||||||||| ||||| |||||||||||||  | ||||| |    
T  146635 caaggcgcacattatcatatcgccgccatactgaatctctagaaacttctagaagcccgccctaaatacttaaatgcccctattacttgaagactaagca 146734  T
Q  264 accgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    ||| |||||||||| |||||||||||| | |||||||||||| | || ||||||  |||| ||||||||||||||||    
T  146735 accaaaacccaagctcatagaaggctataaataccacccttgagaacactctcagatatctaataatcagtctaaaa 146811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 339
Target Start/End: Original strand, 149774 - 150017
Alignment:
Q  97 aagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcgcgcattacccccgtgccgcctcaat 196  Q
    ||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||| || |||||  ||||||||||| |     ||||||  | |    
T  149774 aagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaaaagaagccaaaaggcccaaggcgcgcattatcatatcgccgccatact 149873  T
Q  197 aa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacat 295  Q
    || ||||||||| ||||||||| ||  |||||||||| ||||| |||||||||||||| | ||||| |||| ||||||||||||||||||||||| | ||    
T  149874 aaatctctagaaacttctagaagcccgccctaaatacttaaatgcccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaat 149973  T
Q  296 accacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||||||| | || ||||||  |||| |||||||||||||||    
T  149974 accacccttgagaacactctcagatatctaataatcagtctaaa 150017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 140 - 342
Target Start/End: Complemental strand, 13205 - 13003
Alignment:
Q  140 cacccttaaaagaagcccaagggccccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaat 238  Q
    |||||||||||||||||| | |||| |||||||| |||| ||  |  ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  13205 cacccttaaaagaagccctaaggcctcgggcgcgtattatccatggcgccgcctcactaatctctaaaatcttctagaaaccgccc-taaatacataaat 13107  T
Q  239 acccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaa 338  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||| |||||| | |||||||||||| | || ||||||  ||||||| ||| |||||||    
T  13106 acccctattacttggagactaagcaaccgaaacccaagcccataggaggctataaataccacccttgagaacactctcatctatccaagaattagtctaa 13007  T
Q  339 aacc 342  Q
    ||||    
T  13006 aacc 13003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1778 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 1112 - 968
Alignment:
Q  194 aataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacac 293  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| |     
T  1112 aataatctctaggatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataa 1014  T
Q  294 ataccacccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||||||||| | || ||||||||||||||||| ||||||||||    
T  1013 ataccacccttgagaacactctcaagtatccaatattcagtctaaa 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 64 - 347
Target Start/End: Original strand, 194452 - 194736
Alignment:
Q  64 aagtggaccgtcataatattcgtaaggacctgaaagacctccaaaa-gggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaaggg 162  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| ||||||  |||||| ||||| |||| ||| |||||||||||||||    ||||    
T  194452 aagtggaccgtcataatattcctaaggacctgaaggacctctaaaaagggcttaaagacccgtcaaggaggctttagcacccttaaaagaagttttaggg 194551  T
Q  163 ccccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaag 261  Q
     ||| |||| | | ||  |  |  ||||||| | ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||    
T  194552 tcccaggcgagtactatacgtggcgccgccttactagcctctagaatcttctagaaaccgccc-taaatacataaatacccctattacttggagactaag 194650  T
Q  262 taaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
     |||| |||||||||||||||||  |||| | |||||||| ||| | || ||||||  ||||||||||||||||||||||| ||||    
T  194651 caaccaaaacccaagcccatagagagctataaataccaccattgagaacactctcatctatccaataatcagtctaaaaccctagt 194736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 4101 - 4384
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaa--gggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggc 163  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||  ||||||  |||||| ||||| |||| ||| |||||||||||||||    ||||     
T  4101 gtggaccgtcataatattcctaaggacctgaaggacctctaaaaaagggcttaaagacccgtcaaggaggctttagcacccttaaaagaagttttagggt 4200  T
Q  164 cccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||| |||| | | ||  |  |  ||||||| | ||  ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||     
T  4201 cccaggcgagtactatacgtggcgccgccttactagcctctagaatcttctagaaatcgccc-taaatacataaatacccctattacttggagactaagc 4299  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    |||| ||||||||||||||||| ||||| | |||||||||||| | || ||||||  |||| |||||||||||||||||| ||||    
T  4300 aaccaaaacccaagcccatagagggctataaataccacccttgagaacactctcatctatctaataatcagtctaaaaccctagt 4384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 1689 - 1779
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctc--caaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaag 154  Q
    ||||||||||||||||||| |||||||||||| ||||||   ||||||||||  |||| | ||||| |||| ||| |||||||||||||||    
T  1689 gtggaccgtcataatattcctaaggacctgaaggacctctaaaaaagggcttaaagacacgtcaaggaggctttagcacccttaaaagaag 1779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 7410 - 7693
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaa--gggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggc 163  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||  ||||||  |||| | ||||| |||| ||| |||||||||||||||    ||||     
T  7410 gtggaccgtcataatattcctaaggacctgaaggacctctaaaaaagggcttaaagacacgtcaaggaggctttagcacccttaaaagaagttttagggt 7509  T
Q  164 cccgggcgcgcattacccccgt-gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagt 262  Q
    ||| |||| | | ||  |  |  ||||||| | ||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||     
T  7510 cccaggcgagtactatacgtggcgccgccttactagcctctagaatcttctagaaaccgcgc-taaatacataaatacccctattacttggagactaagc 7608  T
Q  263 aaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaaccatagt 347  Q
    |||| ||||||||||||||||| ||||| | |||||||||||| | || ||||||  ||||||||||||||||||||||| ||||    
T  7609 aaccaaaacccaagcccatagagggctataaataccacccttgagaacactctcatctatccaataatcagtctaaaaccctagt 7693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 334
Target Start/End: Original strand, 78558 - 78805
Alignment:
Q  87 aaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccccgggcgcgcattacccccgt- 185  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||| |||  ||| |||| ||||||| || ||| |  | ||||||||| |    |     
T  78558 aaggacctccaagacctccaaaaggacttttagacccctcaagaaggccttagtacctttaagagaagccaaaaggcacaagacgcgcattatctatatc 78657  T
Q  186 gccgcctcaataatctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaa 285  Q
    ||||||  | |||||||||||| ||||||||| |||||| ||||||| |||||  ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  78658 gccgccatattaatctctagaaacttctagaagccgccc-taaatacttaaatgtccctattacttggagactaagcaaccaaaacccaagcccatagaa 78756  T
Q  286 ggctacacataccacccttggggaccctctcaagtatccaataatcagt 334  Q
    ||||| | |||||||||||| | || |||||||||||| ||||||||||    
T  78757 ggctataaataccacccttgagaacactctcaagtatctaataatcagt 78805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 11149 - 10995
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggc-ttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||  | |||     
T  11149 tggaccgtcataatattcctaaggacctgaaagacctccaaaagggctttttagacccctcaagaaggtcttaacgcccttaaaagaagcccttgagcct 11050  T
Q  166 cgggcgcgcatta-cccccgtgccgcctcaataatctctagaatcttctagaaac 219  Q
    ||| |||||||||  |   | | ||||||||||| ||||||||||||||||||||    
T  11049 cggacgcgcattattcatggcgtcgcctcaataaactctagaatcttctagaaac 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 8871 - 8794
Alignment:
Q  213 tagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    ||||||||||||||||||||||||| ||||||||||||||| |  |||| ||||||||||||||||||||||||||||    
T  8871 tagaaaccgcccctaaatacataaacacccctattacttggagattaagcaaccgaaacccaagcccatagaaggcta 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 56484 - 56623
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| ||||||||||||||||  |||||| |||||||||||||||||||| | ||||| |||| ||| |||||| |||||||||||| | ||||||    
T  56484 ctctagaaccttctagaaaccgccca-aaatacctaaatacccctattacttggagactaagcaaccaaaatccaagctcatagaaggctataaatacca 56582  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaaa 340  Q
    |||||| | || |||||||||||| ||||||||| ||||||    
T  56583 cccttgagaacactctcaagtatctaataatcagcctaaaa 56623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 56359 - 56404
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaaggg 112  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  56359 tggaccgtcataatattcctaaggacctaaaagacctccaaaaggg 56404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 559 - 421
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||||||||||||||||||||  |||  | |||||||||||||||||||| | ||||| ||||||| |||||||||||||||| ||| | ||||||    
T  559 ctctagaatcttctagaaaccgccca-aaaggcctaaatacccctattacttggagactaagcaaccgaagcccaagcccatagaagactataaatacca 461  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| | || |||||||| |||||||| ||||||||||    
T  460 cccttgagaacactctcaagcatccaatattcagtctaaa 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 684 - 636
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||    
T  684 tggaccgtcataatattcctaaggacctaaaggacctccaaaagggctt 636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 44566 - 44452
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggcttttagacccctcaagaaggcgttaacacccttaaaagaagcccaagggccc 165  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||  || | ||||||||||||||||||| ||| ||||      
T  44566 gtggaccgtcataatattcctaaggaactgaaagacctccaaaagggcttttagatccctcaaacagtccttaacacccttaaaagaag-ccatgggctg 44468  T
Q  166 cgggcgcgcattaccc 181  Q
    ||||||||||||||||    
T  44467 cgggcgcgcattaccc 44452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 44450 - 44376
Alignment:
Q  268 aaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaataatcagtctaaaacc 342  Q
    |||||||||||||||||||| || | |||||||||||| | || ||||||||||||||||| |||||||||||||    
T  44450 aaacccaagcccatagaaggttataaataccacccttgagaacactctcaagtatccaatagtcagtctaaaacc 44376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 15092 - 14980
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaa 326  Q
    |||||| ||||||||| |||||||||| | ||||| |||| ||||||||||||||||||||||| | |||||||||||| |  | |||||||||||||||    
T  15092 aaatacctaaatacccttattacttggtgactaagcaaccaaaacccaagcccatagaaggctataaataccacccttgagagcactctcaagtatccaa 14993  T
Q  327 taatcagtctaaa 339  Q
    || ||||||||||    
T  14992 tattcagtctaaa 14980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 19252 - 19195
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  19252 tggaccgtcataatattcctaaggacctaaaagacctccaaaagggcttcttagaccc 19195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 19091 - 19028
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||| ||||||||| |||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  19091 aaatacctaaatacccttattacttggagactaagcaaccaaaacccaagctcatagaaggcta 19028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 15244 - 15205
Alignment:
Q  76 ataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  15244 ataatattcctaaggacctaaaagacctccaaaagggctt 15205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 13996 - 13858
Alignment:
Q  200 ctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacatacca 299  Q
    |||||||| |||||||| | |||||  |||||| ||||||||| ||||||||||   ||||| |||| ||||||||||||||||||||||| | ||||||    
T  13996 ctctagaaccttctagagatcgccca-aaatacctaaatacccttattacttggatactaagcaaccaaaacccaagcccatagaaggctataaatacca 13898  T
Q  300 cccttggggaccctctcaagtatccaataatcagtctaaa 339  Q
    |||||| |  | ||||||| |||| |||| ||||||||||    
T  13897 cccttgagagcactctcaaatatctaatattcagtctaaa 13858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 10483 - 10371
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggctacacataccacccttggggaccctctcaagtatccaa 326  Q
    |||||| ||||||||| ||||||||||   ||||| |||| ||||||||||||||||||||||| | |||||||||||  |  | ||||||| |||| ||    
T  10483 aaatacctaaatacccttattacttggatactaagcaaccaaaacccaagcccatagaaggctataaataccacccttaagagcactctcaaatatctaa 10384  T
Q  327 taatcagtctaaa 339  Q
    || ||||||||||    
T  10383 tattcagtctaaa 10371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 10645 - 10587
Alignment:
Q  66 gtggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt-ttagaccc 123  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||    
T  10645 gtggaccgtcataatattcctaaggacctaagagacctccaaaagggcttcttagaccc 10587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 14131 - 14083
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggctt 115  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  14131 tggaccgtcataatattcctaaggacctaagagacctccaaaagggctt 14083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 2145 - 2208
Alignment:
Q  227 aaatacataaatacccctattacttgggggctaagtaaccgaaacccaagcccatagaaggcta 290  Q
    |||||||||||||||||| || |||||| || ||| ||||||||||||||||||||| ||||||    
T  2145 aaatacataaatacccctgttgcttgggagccaagcaaccgaaacccaagcccatagcaggcta 2208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 151022 - 150975
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaaaagggct 114  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  151022 tggaccgtcataatattcctaaggacctgaaggacctccaaaagggct 150975  T

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Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 6562 - 6522
Alignment:
Q  67 tggaccgtcataatattcgtaaggacctgaaagacctccaa 107  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  6562 tggacagtcataatattcctaaggacctgaaagacctccaa 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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