View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_9 (Length: 628)
Name: NF1715_low_9
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 34353273 - 34353777
Alignment:
| Q |
1 |
aagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacaca |
100 |
Q |
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| T |
34353273 |
aagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacaca |
34353372 |
T |
|
| Q |
101 |
agatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaat |
200 |
Q |
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| T |
34353373 |
agatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaat |
34353472 |
T |
|
| Q |
201 |
ataatattttccatttgaatacctccatgattgaaatattttttataaccacttgtctgaccctgtctgcactcacctaaccgccaactccaattctgca |
300 |
Q |
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| T |
34353473 |
ataat-------atttgaatacctccatgattgaaatattttttataaccacttgtctgaccctgtcagcactcacctaaccgccaactccaattctgca |
34353565 |
T |
|
| Q |
301 |
aaccactgccattacttagcaagtcatgagcctttgaaggataattcccttcaagttaagacttatgagagatataaagaactaagatgtaaagtctaga |
400 |
Q |
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| T |
34353566 |
aaccaccgccattacttagcaagtcatgagcctttgaaggataattcccttcaagttaagacttatgagagatataaagaactaagatgtaaattctaga |
34353665 |
T |
|
| Q |
401 |
tataatttaatgccttgagtggtttgagtgcnnnnnnntccaggtctcaattctgaaagttgaaaccggatatgaaactaaaaatgttggtattagtatg |
500 |
Q |
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| T |
34353666 |
tataatttaatgcc---------ttgagtgcaaaaaaatccaggtctcaattctgaaagttgaaaccggatatgaaactaaaaatgttggtattagtatg |
34353756 |
T |
|
| Q |
501 |
agtaaaaggtttacattgaat |
521 |
Q |
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|||||||||||| |||||||| |
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| T |
34353757 |
agtaaaaggtttccattgaat |
34353777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 34358898 - 34359207
Alignment:
| Q |
1 |
aagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacaca |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
34358898 |
aagacttgactaaggaggaagaagccattgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgcaca |
34358997 |
T |
|
| Q |
101 |
agatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaat |
200 |
Q |
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| T |
34358998 |
agatcatggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaat |
34359097 |
T |
|
| Q |
201 |
ataatattttccatttgaatacctccatgattgaaatattttttataaccacttgtctgaccctgtctgcactcacctaaccgccaactccaattctgca |
300 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |||||| || |
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| T |
34359098 |
ataat-------atttgaatccctccatgattgaaatattttttataaccacttttctggccctgtctgctctcacctaa-tgccaacttgaattctaca |
34359189 |
T |
|
| Q |
301 |
aaccactgccattactta |
318 |
Q |
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|||||| |||| |||||| |
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| T |
34359190 |
aaccaccgccagtactta |
34359207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 529 - 611
Target Start/End: Original strand, 34353937 - 34354018
Alignment:
| Q |
529 |
gtgaatcgcc-attaacttgatgttgtaaggttttagatagagatatgatggtggcgtctctctcatatttgtatggttgttct |
611 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
34353937 |
gtgaatcgcccattaacttgatgttgtaaggttttagatagagatatgatggtggtgtctctctc--atttgtatggttgttct |
34354018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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