View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_90 (Length: 350)
Name: NF1715_low_90
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 16847636 - 16847319
Alignment:
| Q |
18 |
ttttccatgcttcatttttattttgaaaatcattttcttttagattctaaacaaaaaacccaaaaccatactcagtgaacatgaacccaagtagcaacac |
117 |
Q |
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| T |
16847636 |
ttttccatgcttcatttttattttcaaaatcattttcttttagattctaaacaaaaagcccaaaaccatactcagtgaacatgaacccaagtagcaacac |
16847537 |
T |
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| Q |
118 |
taggaattccagaatggataacaaaaagcatataatatccaggtggggccacattaagagatgggggcccacgaaccgtcgccttataaaccgaattccc |
217 |
Q |
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| T |
16847536 |
taggaattccaacatggataacaaaaagcatataatatccaggtggggccacattaagagatgggggcccacgaaccgtcgccttataaaccgaattcgc |
16847437 |
T |
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| Q |
218 |
aatctttcccggtcctaatgagctcccgaaaccaaactcaccaaaattttgaccttgcatagaattcacaacctcctccaacgcggtaacttctaaaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16847436 |
aatctttcccggtcctaatgagctcccgaaaccaaactcaccaaaattttgatcttgcatagaattcacaacctcctccaacgcggtaacttctaaaaat |
16847337 |
T |
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| Q |
318 |
agcaaccgttgattcatc |
335 |
Q |
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|||||||||||||||||| |
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| T |
16847336 |
agcaaccgttgattcatc |
16847319 |
T |
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