View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_91 (Length: 350)
Name: NF1715_low_91
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_91 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 14104345 - 14104178
Alignment:
| Q |
14 |
agcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacccaaaacagcatacccnnnnnnn |
113 |
Q |
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| T |
14104345 |
agcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacacaaaacagcatacccaaaaaaa |
14104246 |
T |
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| Q |
114 |
ccaaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
181 |
Q |
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| T |
14104245 |
ccaaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
14104178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 14104115 - 14104025
Alignment:
| Q |
244 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagttggtattagccacattgaaat |
334 |
Q |
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| T |
14104115 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagttggtattagccacattgaaat |
14104025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 14092684 - 14092607
Alignment:
| Q |
14 |
agcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacc |
91 |
Q |
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| T |
14092684 |
agcagaaagtttaacaaattcccaaagcccagaaaaagcctccatagaaaacccattccaagtcaaaggacaaccacc |
14092607 |
T |
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