View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_95 (Length: 343)
Name: NF1715_low_95
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_95 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 39 - 343
Target Start/End: Complemental strand, 8548418 - 8548114
Alignment:
| Q |
39 |
ggaagaatatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaattttaataatatttacaag |
138 |
Q |
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| T |
8548418 |
ggaagaatatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaatttttataatatttacaag |
8548319 |
T |
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| Q |
139 |
gactaaaataagacaannnnnnnatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctttttaatctataaaagca |
238 |
Q |
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| T |
8548318 |
gactaaaataagacaatttttttatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctatttaatctataaaagca |
8548219 |
T |
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| Q |
239 |
tgagcattaaccaactggttgtgctcnnnnnnngaaggagcacccttctaaactcttgttagtcatcattacgtttgattatatggccttaatcacgaat |
338 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
8548218 |
tgagcattaaccaactggttgtgctcaaaaaaagaaggagcacccttctaaactcttgttagtcatcattacgtttgcttctctggccttaatcacgaat |
8548119 |
T |
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| Q |
339 |
taatt |
343 |
Q |
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| T |
8548118 |
taatt |
8548114 |
T |
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