View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_96 (Length: 339)
Name: NF1715_low_96
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_96 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 27448270 - 27447949
Alignment:
| Q |
1 |
gatgatgaatccttgcctccaggatgtttccggccgctcctagccatctagagtcgattttatcaactttagatcgccagaagtaagtatttgagaagaa |
100 |
Q |
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| T |
27448270 |
gatgatgaatccttgcctccaggatgtttccggccgctcctagccatctagagtcgattttatcaactttagatcgccagaagtaagtattttagaagaa |
27448171 |
T |
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| Q |
101 |
aaggtcgcaaatatttctagatccacactccctaaatttcagaaaacagtcatgcgcgtcatgcaggaccttgctcccatcgcatatgaagatctaagtg |
200 |
Q |
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| T |
27448170 |
aaggtcgcaaatatttctagatccacactccctaaattttagaaaacagtcatgcgcgtcatgcaggaccttgctcccatcgcatatgaagatctaagtg |
27448071 |
T |
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| Q |
201 |
gaaatatgattttctcccaagttgggtgatgcgcaacttcttgtgggcatcacacatgaagacgatcaataaacatacacctatcgatgatatatttctg |
300 |
Q |
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| T |
27448070 |
gaaatatgattttctcccaagttgggtgatgcgcaacttcttgtgggcatcacacatgaagacgatcaataaacatacacctatcgatgatatatttctg |
27447971 |
T |
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| Q |
301 |
aatgtcaggacacccggctgtg |
322 |
Q |
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| T |
27447970 |
aatgtcaggacacccggctgtg |
27447949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 18091892 - 18091722
Alignment:
| Q |
4 |
gatgaatccttgcctccaggatgtttccggccgctcctagccatctagagtcgattttatcaactttagatcgccagaag-taagtatttgagaagaaaa |
102 |
Q |
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| T |
18091892 |
gatgaatctttgcctccttgatgtttacggcagctcctagccctctagaatatattttatcagctttagatcataaaaaaatatgtatttgtgaagaaaa |
18091793 |
T |
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| Q |
103 |
ggtcgcaaatatttctagatccacactccctaaatttcagaaaacagtcatgcgcgtcatgcaggaccttg |
173 |
Q |
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| T |
18091792 |
ggtcgtatatatttatagatccaaactccctcaatatcagaaaacggttatgtgcgtcgcgcatgaccttg |
18091722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 18091545 - 18091469
Alignment:
| Q |
186 |
atgaagatctaagtggaaatatgattttctcccaagttgggtgatgcgcaacttcttgtgggcatcacacatgaaga |
262 |
Q |
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||||||| ||| ||| ||| |||||| ||||||||||| |||||| ||| ||| | |||||| ||||||||||||| |
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| T |
18091545 |
atgaagacgtaaatggtaatctgatttgctcccaagttgcgtgatgtgcagcttttagtgggcgtcacacatgaaga |
18091469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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