View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_98 (Length: 337)

Name: NF1715_low_98
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_98
NF1715_low_98
[»] chr4 (5 HSPs)
chr4 (138-335)||(35364548-35364748)
chr4 (242-318)||(24060584-24060660)
chr4 (217-324)||(42504212-42504326)
chr4 (242-295)||(30220709-30220761)
chr4 (242-278)||(2765432-2765468)
[»] scaffold0018 (1 HSPs)
scaffold0018 (242-319)||(69948-70025)
[»] chr1 (5 HSPs)
chr1 (212-295)||(1062807-1062889)
chr1 (212-294)||(13085089-13085170)
chr1 (239-324)||(35413031-35413116)
chr1 (242-295)||(43537192-43537245)
chr1 (240-324)||(21540080-21540164)
[»] chr6 (2 HSPs)
chr6 (239-324)||(32871771-32871856)
chr6 (239-324)||(6784720-6784805)
[»] chr3 (2 HSPs)
chr3 (242-324)||(2671911-2671993)
chr3 (221-295)||(26442937-26443010)
[»] chr8 (1 HSPs)
chr8 (212-277)||(26415531-26415595)
[»] chr2 (5 HSPs)
chr2 (217-318)||(14131140-14131240)
chr2 (239-324)||(37714428-37714513)
chr2 (242-318)||(27407430-27407506)
chr2 (239-277)||(24183976-24184014)
chr2 (239-295)||(38320247-38320303)
[»] chr7 (4 HSPs)
chr7 (217-277)||(46413811-46413870)
chr7 (239-277)||(15127639-15127677)
chr7 (242-324)||(22631488-22631570)
chr7 (245-318)||(21882793-21882866)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 138 - 335
Target Start/End: Original strand, 35364548 - 35364748
Alignment:
Q  138 tctatgaattgttataaattatttttaaacactcgtgaaatcctattcgatttacatctttttcactnnnnnnn-gagcgttgctatttatctagagagt 236  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||| |||||        ||||||||||||||||  |||||||    
T  35364548 tctatgaattgctataaattatttttaaacactcgtgaaaccttattcgatttacatatttctcactaaaaaaaagagcgttgctatttattcagagagt 35364647  T
Q  237 ttt--ttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaatgattat 334  Q
    |||  ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35364648 tttttttatcaaaaaaaggtttgacccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgttgaataattat 35364747  T
Q  335 a 335  Q
    |    
T  35364748 a 35364748  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 24060584 - 24060660
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 318  Q
    |||||||||| || | ||| |||||||||||||||||  | |||||||||||||| ||| | || ||||||||||||    
T  24060584 atcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa 24060660  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 42504326 - 42504212
Alignment:
Q  217 ttgctatttatctagagagtttttt-------atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataa 309  Q
    ||||||||||||||||||||||||        ||||||||||| ||| | ||||||||||||||||||  | ||||||||||||||  |||   || |||    
T  42504326 ttgctatttatctagagagtttttatgaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaa 42504227  T
Q  310 ttaaggaaagatgtt 324  Q
    |||||||||| ||||    
T  42504226 ttaaggaaaggtgtt 42504212  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 30220709 - 30220761
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 295  Q
    ||||||||||||||| | |||||||| |||||||||| | ||||||||||||||    
T  30220709 atcaagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag 30220761  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 2765468 - 2765432
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattg 278  Q
    ||||||||||||| | |||||||||||||||||||||    
T  2765468 atcaagaaaaggtctaagccaattaaatttgttattg 2765432  T

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Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 70025 - 69948
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaag 319  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| | || |||||||||||||    
T  70025 atcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaag 69948  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 1062807 - 1062889
Alignment:
Q  212 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 295  Q
    |||||||| |||||||||||| | |||| ||||||||||| |||| ||||||||||||||||||||| | | |||||| |||||    
T  1062807 gagcgttgttatttatctagaaaatttt-tatcaagaaaatgtttcagccaattaaatttgttattggccgaaaatcatgggag 1062889  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 13085170 - 13085089
Alignment:
Q  212 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaaggga 294  Q
    |||| ||| |||||||||||||||||||| ||||||||||  | | || |||||||||||||||||  | |||||||||||||    
T  13085170 gagcattgttatttatctagagagttttt-atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 35413031 - 35413116
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    |||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||  ||| | || ||||||||||||| ||||    
T  35413031 tttatcaagaaaaggtctcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgtt 35413116  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 43537245 - 43537192
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 295  Q
    ||||||||||||| | ||||||||||||||||||||  | ||||||||||||||    
T  43537245 atcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggag 43537192  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 21540080 - 21540164
Alignment:
Q  240 ttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    |||||||||||| || | ||||||||||||||||||||    |||||| |||||||| |||  ||| ||||||| ||||| ||||    
T  21540080 ttatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggtgtt 21540164  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 32871856 - 32871771
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgtta-ttgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||  ||| | || |||||||||||| |||||    
T  32871856 tttatcaagaaaaggtttcaaccaattaaatttgttatttgac-ggaaatcaagggaggtaatagtgtgtaattaaggaaaaatgtt 32871771  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 6784805 - 6784720
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    |||||||| ||||| | | ||||||||||||||||||||    ||||||||||||||| ||| | || |||||||| |||| ||||    
T  6784805 tttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgtt 6784720  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 2671911 - 2671993
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    ||||||||||||| | ||||||||||||||||||||| ||| ||||||  ||||| |||   || ||||||||||||||||||    
T  2671911 atcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtt 2671993  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 26442937 - 26443010
Alignment:
Q  221 tatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 295  Q
    |||||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||    ||||||||||||||    
T  26442937 tatttatctaaaga-ttttttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggag 26443010  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 26415531 - 26415595
Alignment:
Q  212 gagcgttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 277  Q
    |||| ||||||||||||||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  26415531 gagcattgctatttatctagagag-tttttatcaagaaaaggtctcaaccaattaaatttattatt 26415595  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 14131140 - 14131240
Alignment:
Q  217 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaagga 316  Q
    ||||||||||||||||||| ||||||||||||||| || ||  |||||||||| |||||||    |||||||||| |||| ||| | || ||||||||||    
T  14131140 ttgctatttatctagagag-tttttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaagga 14131238  T
Q  317 aa 318  Q
    ||    
T  14131239 aa 14131240  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 37714428 - 37714513
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    |||||||||||||||| | | ||||||||||||||||||   |||||||||| ||||| ||| | || ||||||||||||| ||||    
T  37714428 tttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgtt 37714513  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 27407430 - 27407506
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 318  Q
    ||||||||||| | | |||||||||||||||||||| || ||||||||||| ||| |||   || ||||||||||||    
T  27407430 atcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa 27407506  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 24183976 - 24184014
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgttatt 277  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  24183976 tttatcaagaaaaggtttcagccaattaaatttattatt 24184014  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 38320303 - 38320247
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggag 295  Q
    |||||||||||||| ||| | ||||||||||||||||||   |||||||||| ||||    
T  38320303 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggag 38320247  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 46413870 - 46413811
Alignment:
Q  217 ttgctatttatctagagagttttttatcaagaaaaggtttgagccaattaaatttgttatt 277  Q
    |||||||||||||| ||||||||| |||||||||| || | | ||||||||||||||||||    
T  46413870 ttgctatttatctatagagttttt-atcaagaaaatgtctcaaccaattaaatttgttatt 46413811  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 15127677 - 15127639
Alignment:
Q  239 tttatcaagaaaaggtttgagccaattaaatttgttatt 277  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  15127677 tttatcaagaaaaggtttcagcaaattaaatttgttatt 15127639  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 22631488 - 22631570
Alignment:
Q  242 atcaagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaagatgtt 324  Q
    ||||||||||| | | ||||||||||||||||||||    ||||||||| ||||| ||| | || ||||||||||||| ||||    
T  22631488 atcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgtt 22631570  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 21882866 - 21882793
Alignment:
Q  245 aagaaaaggtttgagccaattaaatttgttattgactggaaatcaagggagacaattgagtataattaaggaaa 318  Q
    |||||||| | | ||||||||||||||||||||  | ||||||||||||||  ||| | || ||||||||||||    
T  21882866 aagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa 21882793  T

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