View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716-Insertion-2 (Length: 174)
Name: NF1716-Insertion-2
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 2e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 2e-87
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 28719800 - 28719634
Alignment:
| Q |
8 |
acaattgttctgcttctgctataaattatcctcctattgttagagttgtttgatttgtgcttgatagcttgtttgttactaaaatatgttggcataaagg |
107 |
Q |
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| T |
28719800 |
acaattgttctgcttctgctataaattatcctcctattgttagagttgtttgatttgtgcttgatagcttgtttgttactaaaatatgttggcataaagg |
28719701 |
T |
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| Q |
108 |
agattgtgatattccaatagaaagagtcaatgaaaattcatctgtcgcttattacagttttatgtaa |
174 |
Q |
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| T |
28719700 |
agattgtgatattccaatagaaagagtcaacgaaaattcatctgtcgcttattacagttttatgtaa |
28719634 |
T |
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Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 40207532 - 40207497
Alignment:
| Q |
90 |
aatatgttggcataaaggagattgtgatattccaat |
125 |
Q |
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| T |
40207532 |
aatatgttggcataaatgagcttgtgatattccaat |
40207497 |
T |
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