View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716-Insertion-3 (Length: 390)

Name: NF1716-Insertion-3
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716-Insertion-3
NF1716-Insertion-3
[»] chr4 (3 HSPs)
chr4 (203-390)||(12715768-12715955)
chr4 (8-205)||(12718299-12718505)
chr4 (212-363)||(4372554-4372705)
[»] chr2 (2 HSPs)
chr2 (206-363)||(26678718-26678875)
chr2 (206-325)||(10290144-10290263)
[»] chr1 (2 HSPs)
chr1 (206-363)||(5278239-5278396)
chr1 (206-332)||(30650945-30651071)
[»] chr6 (3 HSPs)
chr6 (206-325)||(5696434-5696553)
chr6 (206-325)||(25036282-25036401)
chr6 (206-363)||(6017972-6018129)
[»] chr7 (1 HSPs)
chr7 (206-363)||(34792776-34792933)
[»] chr3 (1 HSPs)
chr3 (277-363)||(20848417-20848503)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 203 - 390
Target Start/End: Original strand, 12715768 - 12715955
Alignment:
Q  203 ttaggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcgga 302  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  12715768 ttaggcacagattgcgttctaagacaaatatgttttgtcgtggcattattcctttagaggaccagctgtgtgtcattggttgtggtcatcaggagtcgga 12715867  T
Q  303 gactcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattggacgtgtttatgcggcggatccttgtaa 390  Q
    ||||||||||||||||||| ||||||||||||  | |||||||| ||||||||| ||||||  |||||||||||||||||||||||||    
T  12715868 gactcacttgtttttatctcgtaattttttcgtccagagttgacagcttattcggaattggttgtgtttatgcggcggatccttgtaa 12715955  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 12718299 - 12718505
Alignment:
Q  8 tcatttcctttctagatgatagggaaacaacacannnnnnncaactaatgtcatcaattcgaagctctatttgagnnnnnnnnnn---------caaaca 98  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||                   ||||||    
T  12718299 tcatttcctttctagatgatagggaaacaacacatttttttcaactaatgtcatcaattcgaagctctatttgagagaaaaaaaaaaaaaaaaacaaaca 12718398  T
Q  99 tttgaacaacgtggacagagtaagatacgttatgggccaattgttttgttcaaatcatctacagattctacgtaagatgcaaatagtacacctccaagtt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12718399 tttgaacaacgtggacagagtaagatacgttatgggccaattgttttgttcaaatcatctacagattctacgtaagatgcaaatagcacacctccaagtt 12718498  T
Q  199 gcagtta 205  Q
    |||||||    
T  12718499 gcagtta 12718505  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 363
Target Start/End: Original strand, 4372554 - 4372705
Alignment:
Q  212 gattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagactcactt 311  Q
    |||||| | ||||||||| |||||||||||||| |||||||| ||  |||| ||| || ||||| |||||||| |||||  |||||||||||||||| ||    
T  4372554 gattgcctactaagacaagtctgtttcgtcgtgacattattccttctgaggctcaactgtgtgttagtggttgcggtcaataggagtcggagactcattt 4372653  T
Q  312 gtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    |||||||||||||| | |||| |||| ||  || | ||||||||| ||||||    
T  4372654 gtttttatcttgtactctttttggtcagatctggcagcttattcggaattgg 4372705  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 363
Target Start/End: Complemental strand, 26678875 - 26678718
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| |||||| ||||||||||||||||| |||||||||| ||  |||| ||| || ||| | |||||||| ||||| |||||||| |||||    
T  26678875 ggcatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagac 26678776  T
Q  306 tcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    ||| |||||||||||||||| | |||| ||||  | ||| | ||||||||| ||||||    
T  26678775 tcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattgg 26678718  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 10290144 - 10290263
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||| | |||||| ||||||||||||||||| |||||||||| |   |||| ||| |  ||| | |||||||| ||||| |||||||| |||||    
T  10290144 ggcatagatttccttctaaaacaaatctgtttcgtcgaggcattattcctcctgaggctcaaccatgtattagtggttgcggtcaacaggagtccgagac 10290243  T
Q  306 tcacttgtttttatcttgta 325  Q
    ||| ||||||||||||||||    
T  10290244 tcatttgtttttatcttgta 10290263  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 363
Target Start/End: Original strand, 5278239 - 5278396
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| |||||| ||||||||||||||||| |||||||||| ||  |||| ||| || ||| | |||||||| ||||| |||||||| |||||    
T  5278239 ggcatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagac 5278338  T
Q  306 tcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    ||| |||||||||||||||| | |||| ||||  | ||| | ||||||||| ||||||    
T  5278339 tcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattgg 5278396  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 30650945 - 30651071
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| | |||||| ||| ||||||| | ||||||| |||| ||  |||| | |||| ||||| ||||| || ||||| ||||||||||||||    
T  30650945 ggcatagattgcctactaagataaacctgtttctttgtggcataattcattccgaggcttagctttgtgttagtgggtgcggtcaacaggagtcggagac 30651044  T
Q  306 tcacttgtttttatcttgtaatttttt 332  Q
    ||| |||||||||||||||| ||||||    
T  30651045 tcatttgtttttatcttgtactttttt 30651071  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 5696434 - 5696553
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| || ||| ||||||||||||||||| |||||||||| ||  |||| ||| || ||| | |||||||| ||||| |||||||| |||||    
T  5696434 ggcatagattgccttttaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagac 5696533  T
Q  306 tcacttgtttttatcttgta 325  Q
    ||| ||||||||||||||||    
T  5696534 tcatttgtttttatcttgta 5696553  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 25036282 - 25036401
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| |||||| |||||| |||||||||| || ||||||| ||  |||| ||| || ||| | |||||||| ||||| |||||||| |||||    
T  25036282 ggcatagattgccttctaaaacaaatttgtttcgtcgaggtattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagac 25036381  T
Q  306 tcacttgtttttatcttgta 325  Q
    ||| ||||||||||||||||    
T  25036382 tcatttgtttttatcttgta 25036401  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 363
Target Start/End: Complemental strand, 6018129 - 6017972
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| |||||| ||||||||||||||| | |||||||||| ||  |||| ||| || ||| |  ||||||  |||||  ||||||| |||||    
T  6018129 ggcatagattgccttctaaaacaaatctgtttcgttgaggcattattccttctgaggctcaactatgtattggtggttacggtcaataggagtccgagac 6018030  T
Q  306 tcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    ||| |||||||||||||||| | |||| ||||  | ||| | ||||||||| ||||||    
T  6018029 tcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattgg 6017972  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 363
Target Start/End: Original strand, 34792776 - 34792933
Alignment:
Q  206 ggcacagattgcgttctaagacaaatctgtttcgtcgtggcattattcttttagaggatcagctctgtgtcagtggttgtggtcatcaggagtcggagac 305  Q
    |||| ||||||| | |||||| |||  ||||||||||||| ||||||| ||  |||| ||| || ||||| ||||| || ||||| |||||||| |||||    
T  34792776 ggcatagattgcatactaagataaacttgtttcgtcgtggtattattccttctgaggctcaactttgtgttagtgggtgcggtcaacaggagtcagagac 34792875  T
Q  306 tcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    ||| |||||||||||||||| | |||| |||| || ||| | | ||||||| ||||||    
T  34792876 tcatttgtttttatcttgtactatttttggtcagatttggcagtttattcggaattgg 34792933  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 20848503 - 20848417
Alignment:
Q  277 agtggttgtggtcatcaggagtcggagactcacttgtttttatcttgtaattttttcggtcggagttgacrgcttattcgaaattgg 363  Q
    |||||||| ||||| |||||||| |||||||| |||||||||||||||| | |||| ||||  | ||| | ||||||||| ||||||    
T  20848503 agtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattgg 20848417  T

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