View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716-Insertion-4 (Length: 320)

Name: NF1716-Insertion-4
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716-Insertion-4
NF1716-Insertion-4
[»] chr7 (5 HSPs)
chr7 (195-272)||(2475751-2475828)
chr7 (7-99)||(2475924-2476016)
chr7 (257-320)||(19589938-19590001)
chr7 (245-303)||(20176460-20176518)
chr7 (255-300)||(16259184-16259229)
[»] chr1 (4 HSPs)
chr1 (246-320)||(15245156-15245230)
chr1 (246-300)||(26661348-26661402)
chr1 (7-95)||(15244911-15244999)
chr1 (254-300)||(17597475-17597521)
[»] chr3 (1 HSPs)
chr3 (246-305)||(3285485-3285544)
[»] chr4 (3 HSPs)
chr4 (246-300)||(9274537-9274591)
chr4 (250-300)||(10180139-10180189)
chr4 (246-308)||(12109145-12109207)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 2475828 - 2475751
Alignment:
Q  195 acaaacaagttttctacttaaaagttataggaaattgtagcaactcaggcagatcgatatctttttatgctttaactt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||    
T  2475828 acaaacaagttttctacttaaaagttataggaaattgtagcaactcagtcggattgatatctttttatactttaactt 2475751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 2476016 - 2475924
Alignment:
Q  7 agtgaccaccaggttgttaggaaaccatagaaaaatataactatgtagatcgtatcaaagctctttcataatcaattctttgtttaaactaca 99  Q
    ||||||||||||||||| |||||| |||||||||||||| || ||||||||||| ||||||||| | |||||||||| ||||| |||||||||    
T  2476016 agtgaccaccaggttgtcaggaaaacatagaaaaatatagctctgtagatcgtagcaaagctctgtaataatcaattgtttgtctaaactaca 2475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 19589938 - 19590001
Alignment:
Q  257 ttttatgctttaacttggatagtgtatacttacacttagtcttttcacccttagatattcatag 320  Q
    |||||| || ||||||||| ||||||||||| |||  |||||||||||||||| ||| ||||||    
T  19589938 ttttatactataacttggacagtgtatacttgcacccagtcttttcacccttaaatactcatag 19590001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 20176460 - 20176518
Alignment:
Q  245 agatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttttca 303  Q
    |||||||||||||||||| || ||||||||| ||||||| |||  ||| ||||||||||    
T  20176460 agatcgatatctttttatactataacttggacagtgtatccttgaactcagtcttttca 20176518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 16259184 - 16259229
Alignment:
Q  255 ctttttatgctttaacttggatagtgtatacttacacttagtcttt 300  Q
    |||||||| || ||||||||| ||||||||||| ||||||||||||    
T  16259184 ctttttatactataacttggacagtgtatacttgcacttagtcttt 16259229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 15245156 - 15245230
Alignment:
Q  246 gatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttttcacccttagatattcatag 320  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||||| ||||| |||||||| |||| |||||    
T  15245156 gatcgatatctttttatgctataacttggaccgtgtatacttgcacttaatctttccacccttaaatatacatag 15245230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 26661348 - 26661402
Alignment:
Q  246 gatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttt 300  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||| |||||||    
T  26661348 gatcgatatctttttatactataacttggatagtgtatacttgcactaagtcttt 26661402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 15244911 - 15244999
Alignment:
Q  7 agtgaccaccaggttgttaggaaaccatagaaaaatataactatgtagatcgtatcaaagctctttcataatcaattctttgtttaaac 95  Q
    |||| |||||||||||  ||||| ||||| |||  |||| |||||||||||||| ||||||||| ||| | |  |||||||||||||||    
T  15244911 agtggccaccaggttgccaggaagccataaaaagctatagctatgtagatcgtagcaaagctctgtcacagttgattctttgtttaaac 15244999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 17597475 - 17597521
Alignment:
Q  254 tctttttatgctttaacttggatagtgtatacttacacttagtcttt 300  Q
    ||||||||| || ||||||||||| ||||||||| ||||||||||||    
T  17597475 tctttttatactataacttggataatgtatacttgcacttagtcttt 17597521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 3285485 - 3285544
Alignment:
Q  246 gatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttttcacc 305  Q
    ||||||||||||||||| || ||||||||| ||||||||||| |||||||||||| ||||    
T  3285485 gatcgatatctttttatactataacttggaaagtgtatacttgcacttagtctttccacc 3285544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 9274537 - 9274591
Alignment:
Q  246 gatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttt 300  Q
    ||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||    
T  9274537 gatcgatatctttttatacttgaatttggatagtgtatacttgcacttagtcttt 9274591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 10180139 - 10180189
Alignment:
Q  250 gatatctttttatgctttaacttggatagtgtatacttacacttagtcttt 300  Q
    ||||||||||||| || ||| |||||||||||||||||  |||||||||||    
T  10180139 gatatctttttatactataatttggatagtgtatacttgaacttagtcttt 10180189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 12109207 - 12109145
Alignment:
Q  246 gatcgatatctttttatgctttaacttggatagtgtatacttacacttagtcttttcaccctt 308  Q
    |||||||||||||||||  | ||||||||| | ||||||||| |||||| ||||| |||||||    
T  12109207 gatcgatatctttttatattataacttggacaatgtatacttgcacttaatctttccaccctt 12109145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University