View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716-Insertion-5 (Length: 930)

Name: NF1716-Insertion-5
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716-Insertion-5
NF1716-Insertion-5
[»] chr2 (22 HSPs)
chr2 (459-592)||(25194414-25194546)
chr2 (348-561)||(38563168-38563400)
chr2 (328-422)||(7764025-7764119)
chr2 (43-183)||(19362694-19362834)
chr2 (459-592)||(36948112-36948242)
chr2 (459-561)||(21190374-21190473)
chr2 (459-561)||(30176038-30176137)
chr2 (459-561)||(45155799-45155898)
chr2 (37-185)||(19675251-19675399)
chr2 (350-422)||(45155678-45155751)
chr2 (351-422)||(21190254-21190326)
chr2 (351-422)||(30176185-30176257)
chr2 (351-419)||(35320459-35320527)
chr2 (459-549)||(17395148-17395236)
chr2 (350-422)||(3400051-3400122)
chr2 (350-422)||(41213361-41213432)
chr2 (459-558)||(3399902-3400000)
chr2 (515-561)||(5557793-5557839)
chr2 (659-709)||(5557982-5558032)
chr2 (337-422)||(7485171-7485256)
chr2 (657-694)||(27760049-27760086)
chr2 (459-556)||(41213483-41213579)
[»] chr8 (9 HSPs)
chr8 (314-561)||(8341172-8341432)
chr8 (328-419)||(40491145-40491235)
chr8 (464-595)||(18808222-18808351)
chr8 (351-422)||(18808139-18808211)
chr8 (657-720)||(9491439-9491502)
chr8 (657-720)||(44022037-44022100)
chr8 (338-412)||(44022339-44022413)
chr8 (351-411)||(41162408-41162468)
chr8 (657-688)||(42156826-42156857)
[»] chr7 (6 HSPs)
chr7 (314-561)||(25858984-25859243)
chr7 (487-557)||(47116193-47116263)
chr7 (458-538)||(18710555-18710635)
chr7 (657-705)||(223946-223994)
chr7 (351-422)||(47116340-47116412)
chr7 (234-280)||(35392387-35392433)
[»] chr5 (11 HSPs)
chr5 (361-560)||(35192692-35192901)
chr5 (479-561)||(34856436-34856518)
chr5 (459-561)||(4931315-4931416)
chr5 (517-561)||(34220767-34220811)
chr5 (351-419)||(41843417-41843485)
chr5 (657-720)||(8433294-8433357)
chr5 (657-710)||(4931549-4931602)
chr5 (459-513)||(34220678-34220731)
chr5 (657-686)||(5327395-5327424)
chr5 (352-412)||(34220556-34220619)
chr5 (667-720)||(41843175-41843228)
[»] chr3 (12 HSPs)
chr3 (372-561)||(53489139-53489338)
chr3 (459-561)||(6935641-6935742)
chr3 (479-561)||(50482871-50482953)
chr3 (350-558)||(13795573-13795781)
chr3 (351-419)||(2669758-2669826)
chr3 (37-185)||(45911557-45911705)
chr3 (314-422)||(6935479-6935588)
chr3 (459-561)||(2614440-2614547)
chr3 (668-705)||(11468101-11468138)
chr3 (657-705)||(25373276-25373324)
chr3 (351-409)||(2614613-2614670)
chr3 (667-720)||(6935893-6935946)
[»] chr6 (13 HSPs)
chr6 (351-561)||(2356673-2356896)
chr6 (459-561)||(11081109-11081210)
chr6 (459-561)||(30123689-30123794)
chr6 (350-558)||(12083082-12083290)
chr6 (351-419)||(11575114-11575182)
chr6 (657-720)||(11574818-11574881)
chr6 (459-561)||(18905090-18905192)
chr6 (350-411)||(23070412-23070472)
chr6 (459-556)||(23070534-23070630)
chr6 (668-705)||(24608065-24608102)
chr6 (360-419)||(30123573-30123632)
chr6 (348-417)||(1112469-1112539)
chr6 (314-409)||(11080950-11081047)
[»] chr4 (11 HSPs)
chr4 (351-561)||(9607046-9607271)
chr4 (314-561)||(53685366-53685628)
chr4 (351-422)||(31984426-31984497)
chr4 (310-412)||(31880046-31880148)
chr4 (459-560)||(979943-980043)
chr4 (488-560)||(24404613-24404685)
chr4 (657-717)||(31880383-31880443)
chr4 (351-422)||(24404759-24404831)
chr4 (372-409)||(22315269-22315306)
chr4 (350-411)||(45560127-45560187)
chr4 (459-556)||(45560249-45560345)
[»] scaffold0060 (1 HSPs)
scaffold0060 (351-561)||(34505-34728)
[»] scaffold0090 (2 HSPs)
scaffold0090 (492-592)||(50771-50871)
scaffold0090 (657-719)||(50983-51045)
[»] chr1 (8 HSPs)
chr1 (459-560)||(52127841-52127941)
chr1 (489-561)||(5127721-5127793)
chr1 (314-421)||(48660207-48660315)
chr1 (657-720)||(24184118-24184181)
chr1 (351-422)||(31728597-31728668)
chr1 (338-412)||(24183804-24183878)
chr1 (355-409)||(52127609-52127664)
chr1 (314-422)||(5127536-5127646)
[»] scaffold0683 (2 HSPs)
scaffold0683 (667-720)||(4534-4587)
scaffold0683 (351-419)||(4741-4810)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 459 - 592
Target Start/End: Complemental strand, 25194546 - 25194414
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  25194546 atcaataatataaaaatacaa-ttcaagcgaatatctttatcaatcttctaggttatatttttccttagtttgtacaaagccaaaaataaaaggtttata 25194448  T
Q  559 atgnnnnnnnnagagaatagttataatgtttgtt 592  Q
    |||        |||||||| ||||||||||||||    
T  25194447 atgtttttttaagagaataattataatgtttgtt 25194414  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 348 - 561
Target Start/End: Complemental strand, 38563400 - 38563168
Alignment:
Q  348 ctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnnta--------tcattat 439  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||         |        |||||||    
T  38563400 ctttgataaaataaaaacataat-tttttaaaagagtaattatcgatttaaattgaaaataagatccttaaagataaaaaaaaaaaaaaaaggtcattat 38563302  T
Q  440 tgtaactaacacaaaaaagatcaa------------taatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaa 527  Q
    ||||||||||||| ||||||||||            |||||||||| ||||| || || | ||||| |||||||||||||||||||| | |||| |||||    
T  38563301 tgtaactaacacataaaagatcaagtttttaattaataatataaaaatacaactttaagcaaatatttttatcaatcttttaggttgttatttttcttaa 38563202  T
Q  528 tttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||||||||||| |||||||||||||| |||||||    
T  38563201 tttgtacaaagtcaaaaataaaaggtctataatg 38563168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 328 - 422
Target Start/End: Complemental strand, 7764119 - 7764025
Alignment:
Q  328 actctcctttaaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    |||||| | |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||    
T  7764119 actctcatgtaaaaatagacctttaataaaataaaaacataattttttttaaagagtaattatcaatttaaattaaaaataagattcgtaaagat 7764025  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 19362834 - 19362694
Alignment:
Q  43 aatctagtctatcaaagagcaaaagacaaataaacaatcaatcaccttcattagcccttcaagcagtcgaagtgtcgtttccaaacttcgtctgaagtca 142  Q
    ||||||||||| |||  |||| |||| |||||  || | | |||||||||||||| |||||||||| ||| |||  ||||||||| | |||||||| |||    
T  19362834 aatctagtctaccaagaagcagaagagaaatagtcagttagtcaccttcattagctcttcaagcaggcgaggtgctgtttccaaaatccgtctgaaatca 19362735  T
Q  143 ctagctaaagatgaagagagggctgcaaattcatgagtcaa 183  Q
    || |||||||||| ||| | ||||||||||||| |||||||    
T  19362734 cttgctaaagatggagacaaggctgcaaattcacgagtcaa 19362694  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 459 - 592
Target Start/End: Original strand, 36948112 - 36948242
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    |||||||||||| || ||||| || || ||||||| |||||||||||| |||||| || ||||||||| ||||||||||| |||||||| ||||||||||    
T  36948112 atcaataatatagaaatacaattt-aagcgaatatttttatcaatcttctaggtt-atattttccttagtttgtacaaagtcaaaaatagaaggtttata 36948209  T
Q  559 atgnnnnnnnnagagaatagttataatgtttgtt 592  Q
    |||        |||||||||||||||||||||||    
T  36948210 atg-tttttttagagaatagttataatgtttgtt 36948242  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 21190374 - 21190473
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||  ||||| || || |||||||||||||||||||| | ||||   |||||||||| |||||||||||||||||||||| ||||||||    
T  21190374 atcaataatataaa--tacaattt-aagcgaatatctttatcaatcttctgggttatatttttccttagtttgtacaaagccaaaaataaatggtttata 21190470  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 30176137 - 30176038
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||  ||||| || || |||||||||||||||||||| | ||||   |||||||||| |||||||||||||||||||||| ||||||||    
T  30176137 atcaataatataaa--tacaattt-aagcgaatatctttatcaatcttctgggttatatttttccttagtttgtacaaagccaaaaataaatggtttata 30176041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 45155799 - 45155898
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||  ||||| || || |||||||||||||||||||| | ||||   |||||||||| |||||||||||||||||||||| ||||||||    
T  45155799 atcaataatataaa--tacaattt-aagcgaatatctttatcaatcttatgggttatatttttccttagtttgtacaaagccaaaaataaatggtttata 45155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 19675251 - 19675399
Alignment:
Q  37 acatcgaatctagtctatcaaagagcaaaagacaaataaacaatcaatcaccttcattagcccttcaagcagtcgaagtgtcgtttccaaacttcgtctg 136  Q
    |||| |||||||||||||||||  ||| ||||||||||   | | | |||||||||||||| |||||||||| | | |||| ||  | ||| |  |||||    
T  19675251 acattgaatctagtctatcaaaaggcagaagacaaatagtaagtaagtcaccttcattagctcttcaagcaggcaaggtgttgtcacgaaaatctgtctg 19675350  T
Q  137 aagtcactagctaaagatgaagagagggctgcaaattcatgagtcaaac 185  Q
    || ||||| |||||||||| ||| |||||||||||| || |||||||||    
T  19675351 aaatcacttgctaaagatggagatagggctgcaaatgcacgagtcaaac 19675399  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 45155678 - 45155751
Alignment:
Q  350 ttaataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    |||||||||||||||  ||||| ||| |||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  45155678 ttaataaaataaaaaatataatttttctaaaagagcaattatctattgaaattgaaaataagatccgtaaagat 45155751  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 21190254 - 21190326
Alignment:
Q  351 taataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||  ||||  |||||||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  21190254 taataaaataaaaaatataacttttttaaaagagcaattatctattgaaattgaaaataagatccgtaaagat 21190326  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 30176257 - 30176185
Alignment:
Q  351 taataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||  ||||  |||||||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  30176257 taataaaataaaaaatataacttttttaaaagagcaattatctattgaaattgaaaataagatccgtaaagat 30176185  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 35320459 - 35320527
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    |||||||||||||| ||||| ||||||||| || ||| ||| ||||| |||||||||||||| ||||||    
T  35320459 taataaaataaaaatataatttttttaaaaaagcaatcatctatttatattgaaaataagatccgtaaa 35320527  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 549
Target Start/End: Complemental strand, 17395236 - 17395148
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaa 549  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||| ||||| ||||||| || |||||||||||  |||||||  |||||||||    
T  17395236 atcaataatataaaaatacaacttcaagcgaatat-tttatctatcttctaggttg-ttatttccttaattcatacaaaggaaaaaataaa 17395148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 3400122 - 3400051
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    |||||||||||||||| |||  |||||||||||| ||||||| ||||||||  |||||||||  |||||||||    
T  3400122 ttaataaaataaaaacgtaaa-tttttaaaagagcaattatctatttaaatgtaaaataagaaccgtaaagat 3400051  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 41213361 - 41213432
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    |||||||||||||||| |||  |||||||||||| ||||||| ||||||||| |||| ||||  |||||||||    
T  41213361 ttaataaaataaaaacgtaaa-tttttaaaagagcaattatctatttaaatttaaaacaagaaccgtaaagat 41213432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 3400000 - 3399902
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||| ||||| || || ||||||||| |||  || || || |||   |||||||||| ||||||||||||| | |||||||||||||||    
T  3400000 atcaataatataaaactacaattt-aagcgaatatctatattgattttctatgttatatttttccttagtttgtacaaagccgataataaaaggtttata 3399902  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 5557793 - 5557839
Alignment:
Q  515 attttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||||||||||||||||||||||||  ||||||||||  |||||||||    
T  5557793 attttttccttaatttgtacaaaggtaaaaataaaatttttataatg 5557839  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 709
Target Start/End: Original strand, 5557982 - 5558032
Alignment:
Q  659 atattgtatttttatttgtaaatatataattcaatatgttaatgagaattt 709  Q
    |||||| ||||||| ||||||||||||||| ||||||||||| || |||||    
T  5557982 atattgcatttttaattgtaaatatataatccaatatgttaaggacaattt 5558032  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 7485256 - 7485171
Alignment:
Q  337 taaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    |||||| |||||| |||  ||||||||| ||| | |||| ||||||| ||| ||| ||||||||||||||||| || | |||||||    
T  7485256 taaaaatagacctataaacaaataaaaatatatttttttaaaaagagcaatcatctatttaaattgaaaataaaatccataaagat 7485171  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Original strand, 27760049 - 27760086
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaata 694  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  27760049 ttatattttatttttatttgtaaatatatagttcaata 27760086  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 556
Target Start/End: Original strand, 41213483 - 41213579
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggttta 556  Q
    ||||||||||||||| ||||| || || ||||||||| |||  || || || |||   |||||||||| ||||||||||||| | |||||||||||||    
T  41213483 atcaataatataaaactacaattt-aagcgaatatctatattgattttctatgttatatttttccttagtttgtacaaagccgataataaaaggttta 41213579  T

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Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 314 - 561
Target Start/End: Original strand, 8341172 - 8341432
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||||||| |||  ||||| | |||||| || ||  |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||    
T  8341172 taattggaggctcggctctcatataaaaataggcccctaataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagat 8341271  T
Q  413 tcgtaaagatnnnnnnnnta-tcattattgtaactaacacaaaaaag-----------atcaataatataaaagtacaaattcaaccgaatatctttatc 500  Q
     |||||||||         | |||||||||||||||||||||||||            ||||||||||||||| ||||| ||||| |||||||| |||||    
T  8341272 ccgtaaagataaaaaaagaagtcattattgtaactaacacaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaatatcattatc 8341371  T
Q  501 aatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||| || |||| || | |||||||||||||||||||||  ||||||||||  |||||||||    
T  8341372 aattttctagggtgttattttccttaatttgtacaaaggaaaaaataaaatatttataatg 8341432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 40491235 - 40491145
Alignment:
Q  328 actctcctttaaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    |||||| |||||||| ||| |  ||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  40491235 actctcatttaaaaatagatccctaatagaataaaaacataat-tttttaaaagagaaattatcgttttaaattgaaaataagatccgtaaa 40491145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 595
Target Start/End: Original strand, 18808222 - 18808351
Alignment:
Q  464 taatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatgnn 563  Q
    |||||||||| ||||| || || |||||||||||||||||||| | | ||   |||||||||| |||||||||||||||||||||| |||||||||||      
T  18808222 taatataaaaatacaattt-aagcgaatatctttatcaatcttcttgattatatttttccttagtttgtacaaagccaaaaataaatggtttataatg-t 18808319  T
Q  564 nnnnnnagagaatagttataatgtttgttttt 595  Q
          |||||||| |||||||||||||||||    
T  18808320 ttctttagagaataattataatgtttgttttt 18808351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 18808139 - 18808211
Alignment:
Q  351 taataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||  ||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  18808139 taataaaataaaaaatataatttttttaaaagagcaattatctattgaaattgaaaataagattcgtaaagat 18808211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 720
Target Start/End: Original strand, 9491439 - 9491502
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| ||||||||| |||||||||    
T  9491439 ttatattgtgtttttatttgtaaatatataatgtaatatgttaaggagaatttggttgaattga 9491502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 720
Target Start/End: Complemental strand, 44022100 - 44022037
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    |||||||||||||| |||||||||||||||||  |||||||||| ||||||||| |||||||||    
T  44022100 ttatattgtattttcatttgtaaatatataatctaatatgttaaggagaatttggttgaattga 44022037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 44022413 - 44022339
Alignment:
Q  338 aaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagat 412  Q
    |||||||||||  ||||||||||||||  |||| |||||||||||| ||| ||| ||||||||||||||||||||    
T  44022413 aaaaacagacccctaataaaataaaaatgtaatttttttaaaagagcaatcatctatttaaattgaaaataagat 44022339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 41162468 - 41162408
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataaga 411  Q
    ||||||||||||||  |||| |||||||||||| ||||||| |||||||||||||||||||    
T  41162468 taataaaataaaaatgtaatttttttaaaagagcaattatctatttaaattgaaaataaga 41162408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 688
Target Start/End: Original strand, 42156826 - 42156857
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataat 688  Q
    ||||||||||||||||||||||||||||||||    
T  42156826 ttatattgtatttttatttgtaaatatataat 42156857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 314 - 561
Target Start/End: Complemental strand, 25859243 - 25858984
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||||||| ||| |||||| | |||||| || ||  |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||    
T  25859243 taattggaggctcgactctcatataaaaataggcccctaataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagat 25859144  T
Q  413 tcgtaaagatnnnnnnnntatcattattgtaactaacacaaaaaa-----------gatcaataatataaaagtacaaattcaaccgaatatctttatca 501  Q
     |||||||||          |||||||||||| ||||||||||||            ||||||||||||||| ||||| ||||| |||||||| ||||||    
T  25859143 ccgtaaagataaaaaaaaagtcattattgtaattaacacaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaatatcattatca 25859044  T
Q  502 atcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    || ||  ||| || | |||||||||||||||||||||  ||||||||||  |||||||||    
T  25859043 attttccagggtgttattttccttaatttgtacaaaggaaaaaataaaatatttataatg 25858984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 487 - 557
Target Start/End: Complemental strand, 47116263 - 47116193
Alignment:
Q  487 cgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttat 557  Q
    |||||||| ||||||||||| ||||||   ||||| |||| ||||||||||||||||||||||||||||||    
T  47116263 cgaatatccttatcaatcttctaggttatattttttcttactttgtacaaagccaaaaataaaaggtttat 47116193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 18710555 - 18710635
Alignment:
Q  458 gatcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaag 538  Q
    |||||||||||||||| || || ||||| | ||||||||||||||| |||||||||| | |||| |||| || ||||||||    
T  18710555 gatcaataatataaaaatataacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaag 18710635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 705
Target Start/End: Complemental strand, 223994 - 223946
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgaga 705  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||    
T  223994 ttatattgtggttttatttgtaaatatataatccaatatgctaatgaga 223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 47116412 - 47116340
Alignment:
Q  351 taataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||  ||| | |||||| ||||| ||||||| ||||||||||||||||| || |||||||||    
T  47116412 taataaaataaaaaagatagtttttttataagagcaattatctatttaaattgaaaataaaatccgtaaagat 47116340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 35392387 - 35392433
Alignment:
Q  234 ttacctgaacatctttcaacttgattccagcagcaacaaataccaaa 280  Q
    ||||||||| |||||||| ||||||||||||||||||| | ||||||    
T  35392387 ttacctgaagatctttcatcttgattccagcagcaacagaaaccaaa 35392433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 361 - 560
Target Start/End: Complemental strand, 35192901 - 35192692
Alignment:
Q  361 aaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnntatcattattgtaactaacacaaaaaagat 460  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||| ||        |  || ||||||||||||||||||||| ||    
T  35192901 aaaacataatttttttaaaagagcaattatcgatttaaattgaaaataagatccataaaaataaaaaaagt--cactattgtaactaacacaaaaaatat 35192804  T
Q  461 caata------------atataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataa 548  Q
    |||||            |||||||| ||||| ||||| ||||||||||||||||| || |||| || | || ||||||||||||||||||  ||||||||    
T  35192803 caatattctaatcaataatataaaaatacaacttcaagcgaatatctttatcaattttctaggctgttattatccttaatttgtacaaagggaaaaataa 35192704  T
Q  549 aaggtttataat 560  Q
    ||||||||||||    
T  35192703 aaggtttataat 35192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 479 - 561
Target Start/End: Complemental strand, 34856518 - 34856436
Alignment:
Q  479 aattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||||||| |||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||||||| |||||    
T  34856518 aattcaagcgaatatctttatcaatcttctaggttatatttttccttagtttgtacaaagccaaaaataaaaggtttgtaatg 34856436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 4931315 - 4931416
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    |||||||| |||||| ||||| || ||  ||||||||||||||||||| ||||||   ||||| |||| |||||||||||| ||||||||||||||||||    
T  4931315 atcaataaaataaaaatacaattt-aagtgaatatctttatcaatcttctaggttatattttttcttactttgtacaaagcaaaaaataaaaggtttata 4931413  T
Q  559 atg 561  Q
    |||    
T  4931414 atg 4931416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 34220767 - 34220811
Alignment:
Q  517 tttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  34220767 tttttccttagtttgtacaaagccaaaaataaaaggtttataatg 34220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 41843485 - 41843417
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    |||| ||||||||| ||||| |||||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  41843485 taattaaataaaaatataatttttttaaaagagcaatcatctatttaaattgaaaataagatccgtaaa 41843417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 657 - 720
Target Start/End: Original strand, 8433294 - 8433357
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    ||||||||| ||||||||||||||||||||||  || ||||||| ||||||||  |||||||||    
T  8433294 ttatattgtgtttttatttgtaaatatataatctaacatgttaaggagaatttagttgaattga 8433357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 710
Target Start/End: Original strand, 4931549 - 4931602
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttg 710  Q
    ||||||| | |||| ||||||||||||||||| ||||||||||| |||||||||    
T  4931549 ttatattatgttttcatttgtaaatatataatccaatatgttaaggagaatttg 4931602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 34220678 - 34220731
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggtt 513  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||||||| ||||||    
T  34220678 atcaataatataaaaatacaa-ttcaagtgaatatctttatcaatcttctaggtt 34220731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 686
Target Start/End: Complemental strand, 5327424 - 5327395
Alignment:
Q  657 ttatattgtatttttatttgtaaatatata 686  Q
    ||||||||||||||||||||||||||||||    
T  5327424 ttatattgtatttttatttgtaaatatata 5327395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 34220556 - 34220619
Alignment:
Q  352 aataaaataaaaacata---atctttttaaaagagtaattatcgatttaaattgaaaataagat 412  Q
    |||||||||||||||||    | ||||||||| || ||||||| ||||||||||||||||||||    
T  34220556 aataaaataaaaacatatacttttttttaaaatagcaattatctatttaaattgaaaataagat 34220619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 720
Target Start/End: Complemental strand, 41843228 - 41843175
Alignment:
Q  667 tttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    |||||||||||| ||||| ||| ||||||||||| |||||||||| ||| ||||    
T  41843228 tttttatttgtatatatacaatccaatatgttaaggagaatttgactgatttga 41843175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 7e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 372 - 561
Target Start/End: Original strand, 53489139 - 53489338
Alignment:
Q  372 tttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnntatcattattgtaactaacacaaaaaag-----------at 460  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||           ||    
T  53489139 tttttaaaagagcaattatcaatttaaattgaaaataagatccgtaaagataaaaaaaag-tcattattgtaactaacacaaaaaagttgatattctaat 53489237  T
Q  461 caataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataat 560  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||| || || | || | |||||||||||||||||||||  ||||||||||| ||||||||    
T  53489238 caataatataaaaatacaacttcaaacgaatatcattatcaattttctaaggtgttattttccttaatttgtacaaaggaaaaaataaaagatttataat 53489337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 6935641 - 6935742
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    |||||||| |||||| ||||| || || |||||||||||||||||||| ||||||   ||||| |||| ||||||||||||||||||||| |||||||||    
T  6935641 atcaataacataaaaatacaattt-aagcgaatatctttatcaatcttctaggttatattttttcttactttgtacaaagccaaaaataataggtttata 6935739  T
Q  559 atg 561  Q
    |||    
T  6935740 atg 6935742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 479 - 561
Target Start/End: Original strand, 50482871 - 50482953
Alignment:
Q  479 aattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||||||| |||||||||||||||||||| ||||||   |||||||||| |||||||| ||||||||||||||||||| |||||    
T  50482871 aattcaagcgaatatctttatcaatcttctaggttatatttttccttagtttgtacagagccaaaaataaaaggtttgtaatg 50482953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 350 - 558
Target Start/End: Complemental strand, 13795781 - 13795573
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnntat--cattattgtaacta 447  Q
    |||||||||||||||| |||  |||||||||||| ||||||  ||||||||| |||||||||  |||||||||         |   | ||||||||||||    
T  13795781 ttaataaaataaaaacgtaaa-tttttaaaagagcaattatttatttaaatttaaaataagaaccgtaaagataaaaaataaaagcctttattgtaacta 13795683  T
Q  448 acacaaaaaagatcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaata 547  Q
    ||| | |||||||||||||||||||| ||| |||| || ||||||||| |||  || || || |||   |||||||||| ||||||||||||| | ||||    
T  13795682 acatataaaagatcaataatataaaactac-aatttaagcgaatatctatattgattttctatgttatatttttccttagtttgtacaaagccgataata 13795584  T
Q  548 aaaggtttata 558  Q
    |||||||||||    
T  13795583 aaaggtttata 13795573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 2669758 - 2669826
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    ||||||||||||||  |||| |||||||||||| | | ||| |||||||||||||||||||||||||||    
T  2669758 taataaaataaaaatgtaatttttttaaaagagcagtcatctatttaaattgaaaataagattcgtaaa 2669826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 45911557 - 45911705
Alignment:
Q  37 acatcgaatctagtctatcaaagagcaaaagacaaataaacaatcaatcaccttcattagcccttcaagcagtcgaagtgtcgtttccaaacttcgtctg 136  Q
    |||| |||||||||||||||||  ||| ||||||||||   | | | |||||||||||||| |||||||||| | | |||| ||  | ||| |  |||||    
T  45911557 acattgaatctagtctatcaaaaggcagaagacaaatagtaagtaagtcaccttcattagctcttcaagcaggcaaggtgttgtcacgaaaatctgtctg 45911656  T
Q  137 aagtcactagctaaagatgaagagagggctgcaaattcatgagtcaaac 185  Q
    || ||||| |||||||||| ||| |||||||||||| || |||||||||    
T  45911657 aaatcacttgctaaagatggagatagggctgcaaatgcacgagtcaaac 45911705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 6935479 - 6935588
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||||||| ||| |||||| | |||| | || ||  ||||||||||||||  ||||| |||||||||||| ||||||| ||||||||||||||||| ||    
T  6935479 taattggaggctcgactctcatgtaaatataggcccctaataaaataaaaaatataatttttttaaaagagcaattatctatttaaattgaaaataaaat 6935578  T
Q  413 tcgtaaagat 422  Q
      ||||||||    
T  6935579 cggtaaagat 6935588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 2614547 - 2614440
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttcc-----ttaatttgtacaaagccaaaaataaaaggt 553  Q
    |||||||| |||||| |||||  |||| | |||| ||||||||||||| ||||||| | ||||||     |||||||| ||| || ||||||||||||||    
T  2614547 atcaataaaataaaaatacaacatcaagctaatagctttatcaatcttctaggttgttattttccctagtttaatttgcacacagacaaaaataaaaggt 2614448  T
Q  554 ttataatg 561  Q
    ||||||||    
T  2614447 ttataatg 2614440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 705
Target Start/End: Complemental strand, 11468138 - 11468101
Alignment:
Q  668 ttttatttgtaaatatataattcaatatgttaatgaga 705  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11468138 ttttatttgtaaatatataatccaatatgttaatgaga 11468101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 705
Target Start/End: Original strand, 25373276 - 25373324
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgaga 705  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||||    
T  25373276 ttatattgtggttttatttgtaaatatataatccaatatgctaatgaga 25373324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 2614670 - 2614613
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataa 409  Q
    ||||||||||||||| |||| |||||||||||| ||| ||| |||| ||||||||||||    
T  2614670 taataaaataaaaacttaatttttttaaaagagcaatcatctattt-aattgaaaataa 2614613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 720
Target Start/End: Original strand, 6935893 - 6935946
Alignment:
Q  667 tttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||| || ||||||    
T  6935893 ttttcatttgtaaatatataatccaacatgttaaggagaatttggttaaattga 6935946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 351 - 561
Target Start/End: Original strand, 2356673 - 2356896
Alignment:
Q  351 taataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnnta-tcattattgtaactaa 448  Q
    |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||| |||||||||         | ||||||||||||||||    
T  2356673 taataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagatccgtaaagataaaaaaaaaagtcattattgtaactaa 2356772  T
Q  449 cacaaaaaag-----------atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaa 537  Q
    |||||||||            ||||||||||||||| ||||| ||||| |||| ||| |||||||| || |||| || | ||||||||||||||||||||    
T  2356773 cacaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttccttaatttgtacaaa 2356872  T
Q  538 gccaaaaataaaaggtttataatg 561  Q
    |  ||||||||||  |||||||||    
T  2356873 gaaaaaaataaaatatttataatg 2356896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 11081109 - 11081210
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||   |||||| ||| ||||||||| |||||||||||||||||||||    
T  11081109 atcaataatataaaaatacaa-ttcaagcgaatatctttatcaatcttctaagttatatttttctttagtttgtacaatgccaaaaataaaaggtttata 11081207  T
Q  559 atg 561  Q
    |||    
T  11081208 atg 11081210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 30123689 - 30123794
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttg--att-ttttccttaatttgtacaaagccaaaaataaaaggttt 555  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||  ||| || |||||||||||||||||  ||||||||||||||||    
T  30123689 atcaataatataaaaatacaacttcaagcgaatatctttatcaattttctaggttgttattattatccttaatttgtacaaaagcaaaaataaaaggttt 30123788  T
Q  556 ataatg 561  Q
    ||||||    
T  30123789 ataatg 30123794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 350 - 558
Target Start/End: Original strand, 12083082 - 12083290
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnnta--tcattattgtaacta 447  Q
    |||| ||||||||||| |||  |||||||||||| ||||||| ||||||||| |||||||||  |||||||||         |   | ||||||||||||    
T  12083082 ttaaaaaaataaaaacgtaaa-tttttaaaagagaaattatctatttaaatttaaaataagaaccgtaaagataaaaaataaaagcctttattgtaacta 12083180  T
Q  448 acacaaaaaagatcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaata 547  Q
    ||||| |||| ||||||||||||||| ||| |||| || ||||||||| |||  || || || |||   | |||||||| ||||||||||||| | ||||    
T  12083181 acacataaaatatcaataatataaaactac-aatttaagcgaatatctatattgattttctatgttatatatttccttagtttgtacaaagccgataata 12083279  T
Q  548 aaaggtttata 558  Q
    |||||||||||    
T  12083280 aaaggtttata 12083290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 11575182 - 11575114
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    ||||||||||||||  |||| |||||||||||| ||||||| |||| ||||||||||||||| ||||||    
T  11575182 taataaaataaaaatgtaatttttttaaaagagcaattatctatttcaattgaaaataagatccgtaaa 11575114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 657 - 720
Target Start/End: Complemental strand, 11574881 - 11574818
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    ||||||||  ||||||||||||||||||||||  |||||||||| ||||||||| |||||||||    
T  11574881 ttatattgcgtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaattga 11574818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 18905090 - 18905192
Alignment:
Q  459 atcaataatataaaagt-acaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttat 557  Q
    ||||||||||||||| | |||| || || ||||||| |||||||||||| || |||  |||||||| || ||||  ||||||| ||||||||||||||||    
T  18905090 atcaataatataaaaattacaactttaaacgaatatatttatcaatcttctaagttatttttttccatagtttgcgcaaagcc-aaaataaaaggtttat 18905188  T
Q  558 aatg 561  Q
    ||||    
T  18905189 aatg 18905192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 23070412 - 23070472
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataaga 411  Q
    |||||||||||||||| |||  |||||||||||| ||||||| ||||||||| |||||||||    
T  23070412 ttaataaaataaaaacgtaaa-tttttaaaagagcaattatctatttaaatttaaaataaga 23070472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 556
Target Start/End: Original strand, 23070534 - 23070630
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggttta 556  Q
    ||||||||||||||| ||||| || || ||||||||| |||  || || || |||   |||||||||| ||||||||||||| |||||||||||||||    
T  23070534 atcaataatataaaactacaattt-aagcgaatatctatattgattttctatgttatatttttccttagtttgtacaaagccgaaaataaaaggttta 23070630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 705
Target Start/End: Original strand, 24608065 - 24608102
Alignment:
Q  668 ttttatttgtaaatatataattcaatatgttaatgaga 705  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  24608065 ttttatttgtaaatatataattcaatatgctaatgaga 24608102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 30123573 - 30123632
Alignment:
Q  360 aaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    ||||| ||||| |||||| || |  |||||||||||||||||||||||||||| ||||||    
T  30123573 aaaaatataatttttttataacaacaattatcgatttaaattgaaaataagatccgtaaa 30123632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 1112469 - 1112539
Alignment:
Q  348 ctttaataaaataaaa-acataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgta 417  Q
    ||||||||||| |||| ||| ||| ||||||||||| ||||  || ||||||||||||||||| |||||||    
T  1112469 ctttaataaaaaaaaatacacaatttttttaaaagattaatcttctatttaaattgaaaataacattcgta 1112539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 11080950 - 11081047
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctt-taataaaataaaaacata-atctttttaaaagagtaattatcgatttaaattgaaaataa 409  Q
    ||||||||| ||| |||||| | |||||| ||||| | |||||||||||||  ||| || ||||| ||| || ||||||| |||||||||||||||||    
T  11080950 taattggaggctcgactctcatgtaaaaatagaccctctaataaaataaaataatatattttttttaaatagcaattatctatttaaattgaaaataa 11081047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 351 - 561
Target Start/End: Complemental strand, 9607271 - 9607046
Alignment:
Q  351 taataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnnta--tcattattgtaacta 447  Q
    |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||| |||||||||         |  |||||||||||||||    
T  9607271 taataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagatccgtaaagataaaaaaaaaaagtcattattgtaacta 9607172  T
Q  448 acacaaaaaagat------------caataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtaca 535  Q
    |||||||||| ||            ||||||||||||| ||||| ||||| |||| ||| |||||||| || |||| || | ||||||||||||||||||    
T  9607171 acacaaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttccttaatttgtaca 9607072  T
Q  536 aagccaaaaataaaaggtttataatg 561  Q
    |||  ||||||||||  |||||||||    
T  9607071 aagaaaaaaataaaatatttataatg 9607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 314 - 561
Target Start/End: Original strand, 53685366 - 53685628
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||||||| |||  ||||| | |||||| || | | |||||||||||||| ||||| ||||| ||||||| ||||||| ||||||||| ||||||||||    
T  53685366 taattggaggctcggctctcatataaaaataggcatctaataaaataaaaatataattttttttaaaagagcaattatcaatttaaattaaaaataagat 53685465  T
Q  413 tcgtaaagatnnnnnnnnta---tcattattgtaactaacacaaaaaag-----------atcaataatataaaagtacaaattcaaccgaatatcttta 498  Q
     |||||||||         |   |||||||||||||| ||||||||||            ||||||||||||||| ||||| ||||| |||||||| |||    
T  53685466 ccgtaaagataaaaaaaaaaaagtcattattgtaactcacacaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaatatcatta 53685565  T
Q  499 tcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    ||||| || |||| || | |||||||||||||||||||||  ||||||||||  |||||||||    
T  53685566 tcaattttctagggtgttattttccttaatttgtacaaaggaaaaaataaaatatttataatg 53685628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 31984426 - 31984497
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||| |||| ||||| || ||| ||||||||||||||||| ||||||||||||||||||||    
T  31984426 taataaaataaaaacctaattttttttaatgagcaattatcgatttaaattaaaaataagattcgtaaagat 31984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 31880046 - 31880148
Alignment:
Q  310 tatataattggagtctcaactctcctttaaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataa 409  Q
    |||||| |||||| ||| ||||||  | ||||| |||||| ||||||||||||||  |||| |||||||||||| ||| ||| |||||||||||||||||    
T  31880046 tatatatttggaggctcgactctcaatcaaaaatagacctctaataaaataaaaatgtaatttttttaaaagagcaatcatctatttaaattgaaaataa 31880145  T
Q  410 gat 412  Q
    |||    
T  31880146 gat 31880148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 459 - 560
Target Start/End: Complemental strand, 980043 - 979943
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||| ||||| || || ||||||| |||||||||||| || |||  |||||||| || |||| |||||||| |||||||||||||||||    
T  980043 atcaataatataaaaatacaactttaaacgaatatatttatcaatcttctaagttatttttttccatagtttgcacaaagcc-aaaataaaaggtttata 979945  T
Q  559 at 560  Q
    ||    
T  979944 at 979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 488 - 560
Target Start/End: Complemental strand, 24404685 - 24404613
Alignment:
Q  488 gaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataat 560  Q
    ||||||||||||||||||||| ||||   |||||||||| |||||||||||||||||||||| ||| ||||||    
T  24404685 gaatatctttatcaatcttttgggttatatttttccttagtttgtacaaagccaaaaataaatggtctataat 24404613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 657 - 717
Target Start/End: Original strand, 31880383 - 31880443
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaat 717  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  31880383 ttatattgtgtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaat 31880443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 24404831 - 24404759
Alignment:
Q  351 taataaaataaaaac-ataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||||||||||  ||||| |||||||||||| ||||||| ||| |||||||||||||||| | |||||||    
T  24404831 taataaaataaaaaatataatttttttaaaagagcaattatctattgaaattgaaaataagatccataaagat 24404759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 22315269 - 22315306
Alignment:
Q  372 tttttaaaagagtaattatcgatttaaattgaaaataa 409  Q
    |||||||||||||||||||| |||||||||||||||||    
T  22315269 tttttaaaagagtaattatctatttaaattgaaaataa 22315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 45560127 - 45560187
Alignment:
Q  350 ttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataaga 411  Q
    |||||||||||||||| |||  |||||||||||| ||||||| ||||||||| |||| ||||    
T  45560127 ttaataaaataaaaacgtaaa-tttttaaaagagcaattatctatttaaatttaaaacaaga 45560187  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 556
Target Start/End: Original strand, 45560249 - 45560345
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggttta 556  Q
    ||||||||||||||| ||||| || || ||||||||| |||  || || || |||   |||||||||| ||||||||||||| | |||||||||||||    
T  45560249 atcaataatataaaactacaattt-aagcgaatatctatattgattttctatgttatatttttccttagtttgtacaaagccgataataaaaggttta 45560345  T

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Target: scaffold0060 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 351 - 561
Target Start/End: Complemental strand, 34728 - 34505
Alignment:
Q  351 taataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagattcgtaaagatnnnnnnnnta-tcattattgtaactaa 448  Q
    |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||| | |||||||         | ||||||||||||||||    
T  34728 taataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagatccataaagataaaaaaaaaagtcattattgtaactaa 34629  T
Q  449 cacaaaaaag-----------atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaa 537  Q
    |||||||||            ||||||||||||||| ||||| ||||| |||| ||| |||||||| || |||| || | ||||||||||||| ||||||    
T  34628 cacaaaaaaattgatattctaatcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttccttaatttttacaaa 34529  T
Q  538 gccaaaaataaaaggtttataatg 561  Q
    |  ||||||||||  |||||||||    
T  34528 gaaaaaaataaaatatttataatg 34505  T

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Target: scaffold0090 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 492 - 592
Target Start/End: Original strand, 50771 - 50871
Alignment:
Q  492 atctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatgnnnnnnnnagagaatagttataatgtttgt 591  Q
    ||||||||||||||| ||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||        |||||||| |||||||||||||    
T  50771 atctttatcaatcttctaggttgttttttttcttaatttgtactaaggcaaaaataaaaggtttataatgttttttttagagaataattataatgtttgt 50870  T
Q  592 t 592  Q
    |    
T  50871 t 50871  T

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Target: scaffold0090; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 657 - 719
Target Start/End: Original strand, 50983 - 51045
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattg 719  Q
    ||||||| | |||||||||||||||||||||| |||| |||||  |||||||||  |||||||    
T  50983 ttatattttgtttttatttgtaaatatataatccaatttgttatggagaatttgcctgaattg 51045  T

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Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 459 - 560
Target Start/End: Original strand, 52127841 - 52127941
Alignment:
Q  459 atcaataatataaaagtacaaattcaaccgaatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttata 558  Q
    ||||||||||||||| ||||| || || ||||||| |||||||||||| || |||  |||||||| || |||| |||||||| |||||||||||||||||    
T  52127841 atcaataatataaaaatacaactttaaacgaatatatttatcaatcttctatgttatttttttccatagtttgcacaaagcc-aaaataaaaggtttata 52127939  T
Q  559 at 560  Q
    ||    
T  52127940 at 52127941  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 489 - 561
Target Start/End: Original strand, 5127721 - 5127793
Alignment:
Q  489 aatatctttatcaatcttttaggttgattttttccttaatttgtacaaagccaaaaataaaaggtttataatg 561  Q
    |||||||||||||||||| | ||||   |||||||||| |||||||||||||||||||||| |||||||||||    
T  5127721 aatatctttatcaatcttctgggttatatttttccttagtttgtacaaagccaaaaataaatggtttataatg 5127793  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 314 - 421
Target Start/End: Complemental strand, 48660315 - 48660207
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||||||| |||  ||||| | |||||| || ||  |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||    
T  48660315 taattggaggctcggctctcatataaaaataggcccctaataaaataaaaacataattttttttaaaagagcaattatcaatttaaattaaaaataagat 48660216  T
Q  413 tcgtaaaga 421  Q
     ||||||||    
T  48660215 ccgtaaaga 48660207  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 720
Target Start/End: Original strand, 24184118 - 24184181
Alignment:
Q  657 ttatattgtatttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| ||||||||| |||||||||    
T  24184118 ttatattgtgtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaattga 24184181  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 31728597 - 31728668
Alignment:
Q  351 taataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagattcgtaaagat 422  Q
    ||||||| |||||||||||| |||||||||||| || |||| ||||||||||||||||||||  ||||||||    
T  31728597 taataaattaaaaacataatttttttaaaagagcaaatatcaatttaaattgaaaataagatatgtaaagat 31728668  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 24183804 - 24183878
Alignment:
Q  338 aaaaacagacctttaataaaataaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataagat 412  Q
    ||||| || ||| ||||||||||||||  |||| |||||||||||| ||| ||| ||||||||||||||||||||    
T  24183804 aaaaataggcctctaataaaataaaaatgtaatttttttaaaagagcaatcatctatttaaattgaaaataagat 24183878  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 52127609 - 52127664
Alignment:
Q  355 aaaataaaaacataatctttt-taaaagagtaattatcgatttaaattgaaaataa 409  Q
    |||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||    
T  52127609 aaaataaaaacataattttttttaaaagagcaattatctatttaaattgaaaataa 52127664  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 314 - 422
Target Start/End: Original strand, 5127536 - 5127646
Alignment:
Q  314 taattggagtctcaactctcctttaaaaacagacctttaataaaat-aaaaacataatctttttaaaagagtaattatcgatttaaattgaaaataa-ga 411  Q
    ||||||||| |||  ||||| | | |||| |||||  ||||||||| ||||| ||||| |||| ||||||| ||||||| ||| ||||||||||||| ||    
T  5127536 taattggaggctcggctctcatgtgaaaatagacccctaataaaattaaaaatataattttttaaaaagagcaattatctattgaaattgaaaataatga 5127635  T
Q  412 ttcgtaaagat 422  Q
    | |||||||||    
T  5127636 tccgtaaagat 5127646  T

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Target: scaffold0683 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 667 - 720
Target Start/End: Complemental strand, 4587 - 4534
Alignment:
Q  667 tttttatttgtaaatatataattcaatatgttaatgagaatttgattgaattga 720  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||    
T  4587 tttttatttgtaaatatataatccaatatgttaaggagaatttgactgatttga 4534  T

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Target: scaffold0683; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 4810 - 4741
Alignment:
Q  351 taataaaataaaaacataatcttttt-aaaagagtaattatcgatttaaattgaaaataagattcgtaaa 419  Q
    |||| ||||||||| ||||| ||||| ||||||| ||| ||| |||||||||||||||||||| ||||||    
T  4810 taattaaataaaaatataattttttttaaaagagcaatcatctatttaaattgaaaataagatccgtaaa 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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