View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17160_high_1 (Length: 503)
Name: NF17160_high_1
Description: NF17160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17160_high_1 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 448
Target Start/End: Original strand, 26841265 - 26841706
Alignment:
| Q |
6 |
gtcgaagaaaattagaacaatgatatatacttcctctgttttttatcttttgttgttttaactcttagcacaagtccaaaaatcctttctctcttctcac |
105 |
Q |
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|||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841265 |
gtcgaaaaaaaatagaacaatgatatatacttcgtatgttttttatcttttgttgttttaactcttagcacaagtccaaaaatcctttctctcttctcac |
26841364 |
T |
|
| Q |
106 |
catatcggccgccatctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaacggtggtggctgatggtgcgaatatgga |
205 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26841365 |
tatatcggccgccatctaacttcttacccccgctgtcccttctttccaaattcttttggttcataatgtaaacggtggtggctgatggtgcgaatatgga |
26841464 |
T |
|
| Q |
206 |
acagccatccgcatcaccactcatctccattctctcggcgttgatttcgtcgagagaatgggttcttggtgtgttcttgttttttccgatggttgcgccg |
305 |
Q |
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||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26841465 |
acagccatccgcatcaccactggtcactattctctcggcgttgatttcgtcgagaggatgggttcttggtgtgttcttg-tttttccgatggttgcgccg |
26841563 |
T |
|
| Q |
306 |
gcggctgggttttttcaatatcatagcttgcagttgtggttgttttcaaggcggtttctagtggtctcttcatctcctctgtacggttttcatggtttgt |
405 |
Q |
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|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26841564 |
gcggctggattttttcaatatcgtagcttgcggttgtggttgttttcaaggcggtttctggtggtctcttcatctcctctgtacggttttcatggtttgt |
26841663 |
T |
|
| Q |
406 |
ttcagtggtgttatatgttccttttatggctgttttcgagata |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841664 |
ttcagtggtgttatatgttccttttatggctgttttcgagata |
26841706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 89 - 445
Target Start/End: Original strand, 15049398 - 15049758
Alignment:
| Q |
89 |
cctttctctcttctcaccatatcggccgccatctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaa---cggtggtg |
185 |
Q |
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||||||||||||||||| |||||||||| |||| |||||| | | | |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
15049398 |
cctttctctcttctcactgtatcggccgctgcctaaattcttatctctgtcgccccttctttccaaattcctttggttcacaatgtaaacggcggtggtg |
15049497 |
T |
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| Q |
186 |
gctgatggtgcgaatatggaacagccatccgcatcaccactcatctccattctctcggcgttgatttcgtcgagagaatgggttcttggtgtgttcttgt |
285 |
Q |
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||||| |||||||| |||||||| |||||||||||||| || || | ||||||||||| |||||||| || |||||| |||||||||| |||||||| |
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| T |
15049498 |
gctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgcagaaagaatgtgttcttggtgcgttcttgt |
15049597 |
T |
|
| Q |
286 |
tttttccgatggttgcgccggcggctgggttttttcaatatcatagcttgcagttgtggttgttttcaaggcggtttctagtggtctcttcatctcctct |
385 |
Q |
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|||||||| ||| | | ||| |||||| | |||| ||||||| ||||||| |||||||| |||||||||| ||||| | |||| |||||||||||||| |
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| T |
15049598 |
tttttccggtgggtactccgacggctgcg-ttttccaatatcgtagcttgtggttgtggtggttttcaaggtggtttttgatggtttcttcatctcctct |
15049696 |
T |
|
| Q |
386 |
gtacggttttcatggtttgtttcagtggtgtt---atatgttccttttatggctgttttcgag |
445 |
Q |
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||| |||| |||||||||||| |||||| || ||||||||| ||||||||| |||||||| |
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| T |
15049697 |
atac-gtttccatggtttgttttagtggttttcagatatgttccatttatggctattttcgag |
15049758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 1654164 - 1654016
Alignment:
| Q |
299 |
tgcgccggcggctgggttttttcaatatcatagcttgcagttgtggttgttttcaaggcggtttctagtggtctcttcatctcctctgtacggttttcat |
398 |
Q |
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|||||| |||||||||||| ||| |||||| ||||| || ||||| ||||| |||| | ||| | ||||| ||||||||||||||||| ||||| ||| |
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| T |
1654164 |
tgcgccagcggctgggtttcctcag-atcataacttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcatctcctctgtatggtttccat |
1654066 |
T |
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| Q |
399 |
ggtttgtttcagtggtgtt---atatgttccttttatggctgttttcgag |
445 |
Q |
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||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
1654065 |
ggtgtgtttgagtggtgttcagatatgttccttttatggctgttttcgag |
1654016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 52991569 - 52991651
Alignment:
| Q |
268 |
ttcttggtgtgttcttgttttttccgatggttgcgccggcggctgggttttttcaatatcatagcttgcagttgtggttgttt |
350 |
Q |
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||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
52991569 |
ttcttggtgcattcttgttttttccggtggttgcgtcggcggctgggttttttcaatatcgtagcttgcggttgtggtggttt |
52991651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 1654283 - 1654181
Alignment:
| Q |
120 |
tctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgcat |
219 |
Q |
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||||||| |||| | | ||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||| |||||| | |||||||||| |
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| T |
1654283 |
tctaactccttatctctgccgccccttctttccaaatttctttggttctcaatgtaaacggcggtgggtggtggtgcgaagatggaa-aaccatccgcat |
1654185 |
T |
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| Q |
220 |
cacc |
223 |
Q |
| |
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|||| |
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| T |
1654184 |
cacc |
1654181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 840838 - 840801
Alignment:
| Q |
44 |
ttttttatcttttgttgttttaactcttagcacaagtc |
81 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||||| |
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| T |
840838 |
ttttttatcttttgatgttttaactcttggcacaagtc |
840801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 12792810 - 12792854
Alignment:
| Q |
171 |
atgtaaacggtggtggctgatggtgcgaatatggaacagccatcc |
215 |
Q |
| |
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||||||| ||||||||||| ||||||||| ||||||||||||||| |
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| T |
12792810 |
atgtaaatggtggtggctggtggtgcgaagatggaacagccatcc |
12792854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 5745492 - 5745534
Alignment:
| Q |
181 |
tggtggctgatggtgcgaatatggaacagccatccgcatcacc |
223 |
Q |
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| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
5745534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 22376 - 22334
Alignment:
| Q |
181 |
tggtggctgatggtgcgaatatggaacagccatccgcatcacc |
223 |
Q |
| |
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||||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
22334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 26025527 - 26025576
Alignment:
| Q |
32 |
atacttcctctgttttttatcttttgttgttttaactcttagcacaagtc |
81 |
Q |
| |
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||||| |||| ||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
26025527 |
atactccctccgttttttatcttttgatgttttagctcttggcacaagtc |
26025576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 21727949 - 21727901
Alignment:
| Q |
33 |
tacttcctctgttttttatcttttgttgttttaactcttagcacaagtc |
81 |
Q |
| |
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|||| |||| ||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
21727949 |
tactccctccgttttttatcttttgatgttttagctcttggcacaagtc |
21727901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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