View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17161_high_3 (Length: 590)
Name: NF17161_high_3
Description: NF17161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17161_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 543094 - 543449
Alignment:
| Q |
25 |
caccataaaagttataactgtatagcatgttaaagcagtacttactagttaccagttattaattgtgagaatactgtacactcataattactatgcttcg |
124 |
Q |
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| T |
543094 |
caccataaaagtcataactgtatgacatgttaaagcagtacttactaattaccagttattaattgtgagaataatgtacactcataattactatgcttcg |
543193 |
T |
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| Q |
125 |
ttggtcatatcatatcatattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtg |
224 |
Q |
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| T |
543194 |
ttggtcatatcatatcatattccatgctaaattaatgaaaaggaaaagaagatgaagtgaatataaagcccaatcaaaagccacgatacagaggttggtg |
543293 |
T |
|
| Q |
225 |
accgtcaatagaaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactct |
324 |
Q |
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| T |
543294 |
accgtcaatggaaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactct |
543393 |
T |
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| Q |
325 |
tttacatactggtgcgatttgcacgacnnnnnnngtcgtgcacaatagcatttttc |
380 |
Q |
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| T |
543394 |
tttacggactcgtgcgatttgcatgactttttttgtcgtgcacaatagcatttttc |
543449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 410 - 575
Target Start/End: Complemental strand, 7779155 - 7778993
Alignment:
| Q |
410 |
tggatcttcaacagaacaacctgattattgtctgctaacttctagtggccggaacgttctgacactattacaggtgtgttcaattaccatataatattat |
509 |
Q |
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| T |
7779155 |
tggatcttcaaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttcaattaccat---atattat |
7779059 |
T |
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| Q |
510 |
taaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgacagttgatac |
575 |
Q |
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| T |
7779058 |
taaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttaacagttgatac |
7778993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 414 - 575
Target Start/End: Complemental strand, 30275840 - 30275682
Alignment:
| Q |
414 |
tcttcaacagaacaacctgattattgtctgctaacttctagtggccggaacgttctgacactattacaggtgtgttcaattaccatataatattattaaa |
513 |
Q |
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| T |
30275840 |
tcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcaattaccat---acattattaaa |
30275744 |
T |
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| Q |
514 |
cattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgacagttgatac |
575 |
Q |
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| T |
30275743 |
cattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatac |
30275682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 139 - 350
Target Start/End: Original strand, 26182531 - 26182732
Alignment:
| Q |
139 |
tcatattccatgcaaaattaatgaaaaggaaaagaaga---tgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtgaccgtcaatag |
235 |
Q |
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|||||||||||||||||| | |||| ||||||||||| |||| ||||||||||| | || ||||||| |||||||||||||||| |
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| T |
26182531 |
tcatattccatgcaaaatataagaaagggaaaagaagaagatgaattgaatataaaaaccaaacaaaagctacgatatagaggttgg------------- |
26182617 |
T |
|
| Q |
236 |
aaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacatactg |
335 |
Q |
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| T |
26182618 |
aaggcaatagacaggtggaaagatagtcacagatattgttgggcaaatcagaattaaaaaacacagtaattgaatggcaagctcactcttataccgattc |
26182717 |
T |
|
| Q |
336 |
gtgcgatttgcacga |
350 |
Q |
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||| ||||||||||| |
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| T |
26182718 |
gtgtgatttgcacga |
26182732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 33509406 - 33509450
Alignment:
| Q |
83 |
ttaattgtgagaatactgtacactcataattactatgcttcgttg |
127 |
Q |
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| T |
33509406 |
ttaattgtgagaataatgtacattcataattactatatttcgttg |
33509450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 35752324 - 35752210
Alignment:
| Q |
199 |
caaaagccacgatatagaggttggtgac---cgtcaatagaaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaa |
295 |
Q |
| |
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|||||| |||||||||||||||||| || ||||||| |||| || |||||| ||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
35752324 |
caaaagtcacgatatagaggttggtaactaccgtcaatggaagacatcagagagacggaaagatagtcataaatattgttgggcatatgagaattaaaaa |
35752225 |
T |
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| Q |
296 |
acaaagtaattgaat |
310 |
Q |
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| T |
35752224 |
gcacagtaattgaat |
35752210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 30038808 - 30038670
Alignment:
| Q |
151 |
caaaattaatgaaaaggaaaagaagatgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtga---ccgtcaatagaaggcactagag |
247 |
Q |
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|||||| || ||||| ||||||||||||||||||||| ||| | || |||||| |||| ||||||||| | |||||||| ||||||||||||| |
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| T |
30038808 |
caaaatcaaagaaaaataaaagaagatgaagtgaatatcaaaaccaagcaaaagt----atatggaggttggtaagcaccgtcaatggaaggcactagag |
30038713 |
T |
|
| Q |
248 |
aggtggaaagatactcataaatattgttgggcaaatgagaatt |
290 |
Q |
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| T |
30038712 |
tagtggaaatatagtcataaatattgttgggaaaatgagaatt |
30038670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 35753205 - 35753152
Alignment:
| Q |
139 |
tcatattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaa |
192 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
35753205 |
tcatattccatgcaaaattaaagaaaatgaaaagaagacgaagtgaatataaaa |
35753152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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