View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17161_low_1 (Length: 698)

Name: NF17161_low_1
Description: NF17161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17161_low_1
NF17161_low_1
[»] chr2 (25 HSPs)
chr2 (159-391)||(1895402-1895634)
chr2 (469-680)||(1895712-1895923)
chr2 (159-383)||(17281850-17282075)
chr2 (159-377)||(1551510-1551728)
chr2 (161-391)||(17375271-17375501)
chr2 (159-272)||(3921584-3921697)
chr2 (11-82)||(1895254-1895325)
chr2 (17-78)||(1551809-1551870)
chr2 (19-76)||(17282158-17282215)
chr2 (159-232)||(34660278-34660351)
chr2 (19-78)||(3921444-3921503)
chr2 (21-78)||(17375153-17375210)
chr2 (515-568)||(4140798-4140851)
chr2 (282-334)||(3921684-3921736)
chr2 (19-78)||(4869507-4869566)
chr2 (287-353)||(4869709-4869775)
chr2 (159-232)||(4869637-4869710)
chr2 (520-568)||(1551257-1551305)
chr2 (20-72)||(14950835-14950887)
chr2 (515-568)||(17281613-17281666)
chr2 (469-512)||(1551367-1551410)
chr2 (469-507)||(17281727-17281765)
chr2 (346-391)||(4140576-4140621)
chr2 (518-551)||(34660599-34660632)
chr2 (518-550)||(4869990-4870022)
[»] chr4 (21 HSPs)
chr4 (159-391)||(53202258-53202490)
chr4 (156-391)||(47518349-47518584)
chr4 (159-391)||(23054132-23054363)
chr4 (181-339)||(6410005-6410164)
chr4 (159-250)||(34227057-34227148)
chr4 (19-78)||(53202118-53202177)
chr4 (19-78)||(47518662-47518721)
chr4 (14-82)||(23054441-23054508)
chr4 (17-78)||(34227204-34227265)
chr4 (469-517)||(53202568-53202616)
chr4 (164-229)||(12469342-12469407)
chr4 (20-72)||(45873102-45873154)
chr4 (516-568)||(53202669-53202721)
chr4 (23-66)||(12489216-12489259)
chr4 (277-323)||(24957572-24957618)
chr4 (181-229)||(12466698-12466746)
chr4 (20-72)||(14441115-14441167)
chr4 (22-72)||(12130516-12130566)
chr4 (514-563)||(47518123-47518172)
chr4 (20-72)||(38093215-38093267)
chr4 (20-72)||(55728692-55728744)
[»] chr6 (6 HSPs)
chr6 (159-377)||(20740570-20740788)
chr6 (159-391)||(21881459-21881691)
chr6 (17-82)||(20740453-20740518)
chr6 (19-78)||(21881318-21881377)
chr6 (517-568)||(20740991-20741042)
chr6 (20-72)||(32747716-32747768)
[»] chr5 (29 HSPs)
chr5 (159-391)||(7766903-7767135)
chr5 (156-387)||(18696922-18697155)
chr5 (159-380)||(27169997-27170219)
chr5 (182-269)||(41355543-41355630)
chr5 (19-82)||(38958379-38958442)
chr5 (287-391)||(7271894-7271995)
chr5 (282-391)||(41355444-41355553)
chr5 (23-78)||(41355722-41355777)
chr5 (159-230)||(38958230-38958301)
chr5 (159-225)||(7271826-7271892)
chr5 (514-568)||(18697327-18697381)
chr5 (159-232)||(6030388-6030461)
chr5 (514-566)||(7766674-7766726)
chr5 (19-78)||(7271708-7271767)
chr5 (287-353)||(6030323-6030389)
chr5 (287-353)||(26656829-26656895)
chr5 (287-353)||(26928416-26928482)
chr5 (24-78)||(27170275-27170329)
chr5 (20-72)||(26331217-26331269)
chr5 (19-78)||(26656630-26656688)
chr5 (19-78)||(26928217-26928275)
chr5 (23-78)||(40599985-40600040)
chr5 (20-58)||(42221388-42221426)
chr5 (23-78)||(7767203-7767255)
chr5 (527-568)||(41355213-41355254)
chr5 (20-72)||(24867205-24867257)
chr5 (182-232)||(26656780-26656830)
chr5 (182-232)||(26928367-26928417)
chr5 (469-517)||(18697228-18697276)
[»] chr8 (10 HSPs)
chr8 (156-391)||(10408814-10409049)
chr8 (159-383)||(5994622-5994846)
chr8 (159-339)||(6444027-6444208)
chr8 (20-72)||(5994485-5994537)
chr8 (19-78)||(10408702-10408761)
chr8 (20-72)||(15050162-15050214)
chr8 (514-567)||(10409225-10409278)
chr8 (23-67)||(3763045-3763089)
chr8 (480-512)||(10409137-10409169)
chr8 (20-72)||(25142902-25142954)
[»] chr1 (20 HSPs)
chr1 (186-391)||(34117991-34118198)
chr1 (281-391)||(39708920-39709029)
chr1 (282-383)||(34655070-34655171)
chr1 (182-345)||(11407928-11408092)
chr1 (156-272)||(34654967-34655083)
chr1 (19-78)||(34654830-34654889)
chr1 (160-270)||(26236671-26236781)
chr1 (182-272)||(39709015-39709105)
chr1 (287-353)||(615825-615891)
chr1 (159-232)||(615753-615826)
chr1 (19-82)||(39709180-39709243)
chr1 (17-77)||(34117896-34117955)
chr1 (527-568)||(34118386-34118427)
chr1 (514-550)||(39708560-39708596)
chr1 (25-78)||(615638-615691)
chr1 (519-568)||(616108-616157)
chr1 (23-72)||(11814695-11814744)
chr1 (24-72)||(2077483-2077531)
chr1 (20-72)||(14351174-14351226)
chr1 (477-517)||(39708650-39708690)
[»] chr7 (4 HSPs)
chr7 (159-382)||(3302567-3302790)
chr7 (19-78)||(11698554-11698613)
chr7 (19-78)||(3302427-3302486)
chr7 (20-72)||(31039000-31039052)
[»] chr3 (6 HSPs)
chr3 (159-232)||(18269763-18269836)
chr3 (19-78)||(43275830-43275890)
chr3 (14-66)||(18269919-18269971)
chr3 (287-340)||(18269711-18269764)
chr3 (23-72)||(31699221-31699270)
chr3 (187-233)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (23-66)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (20-72)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 159 - 391
Target Start/End: Original strand, 1895402 - 1895634
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895402 ccaaaatcaataccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 1895501  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  1895502 gactcatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgag 1895601  T
Q  359 acccacgaaaaccaaacaaccaccgacaagcat 391  Q
    |||||| ||||||||||||||||||||||||||    
T  1895602 acccacaaaaaccaaacaaccaccgacaagcat 1895634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 469 - 680
Target Start/End: Original strand, 1895712 - 1895923
Alignment:
Q  469 tttacgacgatagagagcaaccgcacgtcggaaaggtacagtggagcggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||||||||||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895712 tttacgacgatagagagcaaccgcacgtcggaaaggtatggtgaagtggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 1895811  T
Q  569 ccaaaaaatatacactcatataaataaatatatcaaatttatttcctattatgaatttatatcaaccttgattaataagacacaaagttgcttttgaaaa 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  1895812 ccaaaaaatatacactcatataaataaatatatcaaatttatttcctattatgaatttataacaaccttgattaacaacacacaaagttgcttttgaaaa 1895911  T
Q  669 gaatggaccaat 680  Q
    ||||||||||||    
T  1895912 gaatggaccaat 1895923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 159 - 383
Target Start/End: Complemental strand, 17282075 - 17281850
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaa-ctaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagata 257  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17282075 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagata 17281976  T
Q  258 tgacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttga 357  Q
    ||| |||||||||||||  |||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |||    
T  17281975 tgatccatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctga 17281876  T
Q  358 tacccacgaaaaccaaacaaccaccg 383  Q
     ||| ||||||| |||||||||||||    
T  17281875 gacctacgaaaaacaaacaaccaccg 17281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 159 - 377
Target Start/End: Complemental strand, 1551728 - 1551510
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  1551728 ccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacat 1551629  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    || |||||||||||||| |||| |||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |||     
T  1551628 gatccatcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgag 1551529  T
Q  359 acccacgaaaaccaaacaa 377  Q
    ||||||||||| |||||||    
T  1551528 acccacgaaaatcaaacaa 1551510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 161 - 391
Target Start/End: Original strand, 17375271 - 17375501
Alignment:
Q  161 aaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatga 260  Q
    |||||||| ||||||| ||||||   ||||||| ||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17375271 aaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatga 17375370  T
Q  261 cccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgatac 360  Q
     |||||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||  ||||||||||| ||| |     
T  17375371 tccatcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagag 17375470  T
Q  361 ccacgaaaaccaaacaaccaccgacaagcat 391  Q
    |||||||||||||||||||||||||| ||||    
T  17375471 ccacgaaaaccaaacaaccaccgacaggcat 17375501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 3921584 - 3921697
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  3921584 ccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatat 3921683  T
Q  259 gacccatcaccacc 272  Q
    || |||||||||||    
T  3921684 gatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 1895254 - 1895325
Alignment:
Q  11 catcatcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 82  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1895254 catcaccatcaccaaaactaccattgaacaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 1895325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1551870 - 1551809
Alignment:
Q  17 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1551870 catcaccaaaactaccattgaccacctcaaaaatcaccattaaccctcacctaaaagcaaca 1551809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 17282215 - 17282158
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaa 76  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282215 tcaccaaacctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaa 17282158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 34660278 - 34660351
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34660278 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3921444 - 3921503
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  3921444 tcaccaaaactactatttaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 3921503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 17375153 - 17375210
Alignment:
Q  21 accaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  17375153 accaaaactaccattgaccaccacaaaaaccacaattaaccctcaccaaaaagcaaca 17375210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 4140798 - 4140851
Alignment:
Q  515 cggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  4140798 cggcggatttggaatttgtgtgaggaagaaagaagtacggcggttctaggttta 4140851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 3921684 - 3921736
Alignment:
Q  282 gatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagag 334  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  3921684 gatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4869507 - 4869566
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  4869507 tcacaaaaactaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaaca 4869566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 4869709 - 4869775
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagt 353  Q
    ||||||||||||||||| | || || ||||||||||| ||||||||||||||||  |||||||||||    
T  4869709 atcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt 4869775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 4869637 - 4869710
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||| |||| || ||||||| |||||||| ||| ||||| || ||||||||||||||||| |||||||    
T  4869637 ccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 1551305 - 1551257
Alignment:
Q  520 gatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  1551305 gatttggaatttgtgtgaggaagaaaggagtacaacggttctaggttta 1551257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 14950887 - 14950835
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  14950887 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 14950835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 568
Target Start/End: Complemental strand, 17281666 - 17281613
Alignment:
Q  515 cggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    |||| |||||| ||||| || |||||||||||||||||| ||||||||||||||    
T  17281666 cggcagatttggaatttatgcgaggaagaaaggagtacggcggttctaggttta 17281613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 512
Target Start/End: Complemental strand, 1551410 - 1551367
Alignment:
Q  469 tttacgacgatagagagcaaccgcacgtcggaaaggtacagtgg 512  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||    
T  1551410 tttacgacgacggagagcaaccgcacgtcggaaaggtacggtgg 1551367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 507
Target Start/End: Complemental strand, 17281765 - 17281727
Alignment:
Q  469 tttacgacgatagagagcaaccgcacgtcggaaaggtac 507  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  17281765 tttacgacgacatagagcaaccgcacgtcggaaaggtac 17281727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 4140576 - 4140621
Alignment:
Q  346 caaatagtttgatacccacgaaaaccaaacaaccaccgacaagcat 391  Q
    |||||||| ||| |||||||||||||||| |||||||| |||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcat 4140621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Original strand, 34660599 - 34660632
Alignment:
Q  518 cggatttgaaatttgtgtgaggaagaaaggagta 551  Q
    |||||||| |||||||||||||||||||||||||    
T  34660599 cggatttggaatttgtgtgaggaagaaaggagta 34660632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 550
Target Start/End: Original strand, 4869990 - 4870022
Alignment:
Q  518 cggatttgaaatttgtgtgaggaagaaaggagt 550  Q
    ||||||| |||||||||||||||||||||||||    
T  4869990 cggatttaaaatttgtgtgaggaagaaaggagt 4870022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 159 - 391
Target Start/End: Original strand, 53202258 - 53202490
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53202258 ccaaaatcaacaccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatat 53202357  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    ||  ||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||     
T  53202358 gattcatcaccaccatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgag 53202457  T
Q  359 acccacgaaaaccaaacaaccaccgacaagcat 391  Q
    ||||||||||||||||||||||| |||||||||    
T  53202458 acccacgaaaaccaaacaaccacagacaagcat 53202490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 156 - 391
Target Start/End: Complemental strand, 47518584 - 47518349
Alignment:
Q  156 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 255  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47518584 gatccaaaatcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 47518485  T
Q  256 tatgacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagttt 355  Q
    |||||  ||||||||||||  |||| |||| |||||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||| |    
T  47518484 tatgattcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtct 47518385  T
Q  356 gatacccacgaaaaccaaacaaccaccgacaagcat 391  Q
    || ||||| |||||||||||||||||||||||||||    
T  47518384 gagacccatgaaaaccaaacaaccaccgacaagcat 47518349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 159 - 391
Target Start/End: Complemental strand, 23054363 - 23054132
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||| ||||||| ||||||| |||| ||| ||||| ||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||    
T  23054363 ccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatat 23054264  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    || ||| ||| |||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |     
T  23054263 gatccagcac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcag 23054165  T
Q  359 acccacgaaaaccaaacaaccaccgacaagcat 391  Q
    ||||||||||||||||||||||| |||||||||    
T  23054164 acccacgaaaaccaaacaaccactgacaagcat 23054132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 181 - 339
Target Start/End: Original strand, 6410005 - 6410164
Alignment:
Q  181 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgac 280  Q
    ||||||||||||| ||||||||| ||||||||| ||||| |||||||||||||  || ||||||||||||  |||| ||| | ||| ||||| || ||||    
T  6410005 aaccaccatgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgac 6410104  T
Q  281 cgatcaatcaccacctatgttgcgagcagacataacctcca-ccacaaccaagagagaaa 339  Q
    ||||| |||||||||||| ||||||||| |||||||||||| |||| |||||||||||||    
T  6410105 cgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 34227148 - 34227057
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaac 250  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  34227148 ccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 53202118 - 53202177
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202118 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 53202177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 47518721 - 47518662
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47518721 tcaccaaaactaccattgaccaccacaaaaatcactattaaccctcacctaaaagcaaca 47518662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 23054508 - 23054441
Alignment:
Q  14 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 82  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  23054508 catcgtcaccaaaactaccattgaccaccacaaaac-caccattaaccctcacctaaaagcaacatcag 23054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 34227265 - 34227204
Alignment:
Q  17 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  34227265 catcactaaaactaccattgaccatcacgaaaaccaccattaaccctcacctaaaagcaaca 34227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 469 - 517
Target Start/End: Original strand, 53202568 - 53202616
Alignment:
Q  469 tttacgacgatagagagcaaccgcacgtcggaaaggtacagtggagcgg 517  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  53202568 tttacgacgatagagagcaaccgcacgtcggaaaggtacggtggtgcgg 53202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 12469407 - 12469342
Alignment:
Q  164 atcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 229  Q
    ||||| ||||||| |  ||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  12469407 atcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 45873102 - 45873154
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  45873102 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 45873154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 53202669 - 53202721
Alignment:
Q  516 ggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| || |||||    
T  53202669 ggcggatttaaaatttgtgtgaggaagaaaggagtacggcggttttacgttta 53202721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 12489259 - 12489216
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 66  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  12489259 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 12489216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 24957618 - 24957572
Alignment:
Q  277 tgaccgatcaatcaccacctatgttgcgagcagacataacctccacc 323  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||    
T  24957618 tgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 12466746 - 12466698
Alignment:
Q  181 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 229  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||||||    
T  12466746 aaccaccatgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 14441115 - 14441167
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  14441115 caccaaaactaccattaaccagcacaaaaaccaccattaatcctcaccaaaaa 14441167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 12130516 - 12130566
Alignment:
Q  22 ccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||| ||||    
T  12130516 ccaaaactaccattgaccaccacaaaaactatcattaatcctcaccaaaaa 12130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 47518172 - 47518123
Alignment:
Q  514 gcggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctag 563  Q
    ||||| |||||| |||||||||||| |||||||| ||||| |||||||||    
T  47518172 gcggcagatttggaatttgtgtgagaaagaaaggggtacggcggttctag 47518123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 38093215 - 38093267
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||| | ||||||||||||| |||||| || ||||||| ||||    
T  38093215 caccaaaactaccaataaccaccacaaaaaacaccataaatcctcaccaaaaa 38093267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 55728692 - 55728744
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||| || |||| ||||||||||||| ||||||||| ||||||| ||||    
T  55728692 caccaaaattatcattaaccaccacaaaaaccaccattaatcctcaccaaaaa 55728744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 159 - 377
Target Start/End: Original strand, 20740570 - 20740788
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20740570 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatat 20740669  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    || |||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||     
T  20740670 gatccatcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgag 20740769  T
Q  359 acccacgaaaaccaaacaa 377  Q
    |||||||||||||||||||    
T  20740770 acccacgaaaaccaaacaa 20740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 159 - 391
Target Start/End: Original strand, 21881459 - 21881691
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||| ||||||| || |||  |||||||| ||||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  21881459 ccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatat 21881558  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    || |||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||  ||||||||||| |||     
T  21881559 gatccatcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgag 21881658  T
Q  359 acccacgaaaaccaaacaaccaccgacaagcat 391  Q
    | |||||||||||||||||| ||||||||||||    
T  21881659 agccacgaaaaccaaacaacgaccgacaagcat 21881691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20740453 - 20740518
Alignment:
Q  17 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20740453 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccttcacctaaaagcaacatcag 20740518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 21881318 - 21881377
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  21881318 tcaccaaaactagcattgaccaccacaaaaatcacgattaaccctcaccaaaaagcaaca 21881377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 20740991 - 20741042
Alignment:
Q  517 gcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  20740991 gcggatttaaaatttgtgtgaggaagaaaggagtacagcggttctaggttta 20741042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 32747768 - 32747716
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||| ||||    
T  32747768 caccaaaactaccattaaccaccacaaaaaccaccattacacctcaccaaaaa 32747716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 159 - 391
Target Start/End: Complemental strand, 7767135 - 7766903
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||  ||||||| |||| || |||||||| ||||||||| |||||||||||||||||||||||||||||  | |||||||| ||||||||||||    
T  7767135 ccaaaatcaacaccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatat 7767036  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    || |||||||||||||  || ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||     
T  7767035 gatccatcaccaccattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgag 7766936  T
Q  359 acccacgaaaaccaaacaaccaccgacaagcat 391  Q
    ||||||||||||||||||||||||| |||||||    
T  7766935 acccacgaaaaccaaacaaccaccggcaagcat 7766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 18696922 - 18697155
Alignment:
Q  156 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 255  Q
    ||||||||||||| | ||||| ||||| | |||||||| ||||||||| |||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  18696922 gatccaaaatcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctaga 18697021  T
Q  256 tatgacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccac--cacaaccaagagagaaaagaaatcaaatagt 353  Q
    ||||| |||||||||||||| |||| |||| |||||||||||||||||| ||| |||||||||||||  ||||||||| | | |||| ||||||||||||    
T  18697022 tatgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagt 18697121  T
Q  354 ttgatacccacgaaaaccaaacaaccaccgacaa 387  Q
     ||| |||||||||||||||||||||||||||||    
T  18697122 ctgagacccacgaaaaccaaacaaccaccgacaa 18697155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 159 - 380
Target Start/End: Complemental strand, 27170219 - 27169997
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    ||||||| || ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||  ||||| ||||  || | | ||||    
T  27170219 ccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatat 27170120  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagag-aaaagaaatcaaatagtttga 357  Q
    || |||| ||||||||| ||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| ||||  ||||||||||  |||    
T  27170119 gatccattaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctga 27170020  T
Q  358 tacccacgaaaaccaaacaacca 380  Q
     ||||||||||||||||||||||    
T  27170019 gacccacgaaaaccaaacaacca 27169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 41355630 - 41355543
Alignment:
Q  182 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcacc 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  41355630 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 38958442 - 38958379
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38958442 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacgtcag 38958379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 7271894 - 7271995
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgatacccacgaaaaccaaacaaccaccgaca 386  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||   |  ||||  |||||||||||||||| ||||    
T  7271894 atcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgaca 7271990  T
Q  387 agcat 391  Q
    |||||    
T  7271991 agcat 7271995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 41355553 - 41355444
Alignment:
Q  282 gatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgatacccacgaaaaccaaacaaccac 381  Q
    |||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||  | | | ||||| |||| ||||||||||    
T  41355553 gatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaaccac 41355454  T
Q  382 cgacaagcat 391  Q
    || |||||||    
T  41355453 cggcaagcat 41355444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 41355777 - 41355722
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355777 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 41355722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 38958301 - 38958230
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaacc 230  Q
    |||||||||| |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38958301 ccaaaatcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 7271826 - 7271892
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcg 225  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  7271826 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 18697327 - 18697381
Alignment:
Q  514 gcggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  18697327 gcggcggatttgaaatttgtgtgaggaagaaaggagtacgacggtcctaggttta 18697381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 6030461 - 6030388
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||| ||||||| |||||||  || |||| ||||||||| ||||||||||||||||||||||||||||    
T  6030461 ccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 7766726 - 7766674
Alignment:
Q  514 gcggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggtt 566  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  7766726 gcggcggatttggaatttgtgtgaggaagaaaggagtacggcggtcctaggtt 7766674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7271708 - 7271767
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  7271708 tcaccaaaagtaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaaca 7271767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 6030389 - 6030323
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagt 353  Q
    ||||||||||||||| ||| || ||||||| |||||| ||||||||||||||||  |||||||||||    
T  6030389 atcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt 6030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 26656829 - 26656895
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagt 353  Q
    |||||||| ||| ||||||||| ||||||||| ||| |||||||||||||||||  |||||||||||    
T  26656829 atcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 26928416 - 26928482
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagt 353  Q
    |||||||| ||| ||||||||| ||||||||| ||| |||||||||||||||||  |||||||||||    
T  26928416 atcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26928482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 27170329 - 27170275
Alignment:
Q  24 aaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||    
T  27170329 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaaca 27170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 26331269 - 26331217
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  26331269 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 26331217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 26656630 - 26656688
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||  ||||||||||    
T  26656630 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcactaaaaagcaaca 26656688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 26928217 - 26928275
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||  ||||||||||    
T  26928217 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcactaaaaagcaaca 26928275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 40600040 - 40599985
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| |||| |||||    
T  40600040 caaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaaca 40599985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 42221388 - 42221426
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccatta 58  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42221388 caccaaaactaccattaaccaccacaaaaatcaccatta 42221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 7767255 - 7767203
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||| |||||||||||||||||| ||||   |||||||||||||||||||||    
T  7767255 caaaactatcattgaccaccacaaaaaccacc---aaccctcacctaaaagcaaca 7767203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 41355254 - 41355213
Alignment:
Q  527 aatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  41355254 aatttgtgtgaggaagaaaggagtaccgcggttctaggttta 41355213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 24867257 - 24867205
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  24867257 caccaaaactaccattaaccaacacaaaaaccaccattaatcctcaccaaaaa 24867205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 26656780 - 26656830
Alignment:
Q  182 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26656780 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 26928367 - 26928417
Alignment:
Q  182 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26928367 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 517
Target Start/End: Original strand, 18697228 - 18697276
Alignment:
Q  469 tttacgacgatagagagcaaccgcacgtcggaaaggtacagtggagcgg 517  Q
    |||||||||| | ||||||||||||||||||||| |||| |||| ||||    
T  18697228 tttacgacgacaaagagcaaccgcacgtcggaaatgtacggtggtgcgg 18697276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 156 - 391
Target Start/End: Original strand, 10408814 - 10409049
Alignment:
Q  156 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 255  Q
    |||||||||| || |||||||  |||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  10408814 gatccaaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctaga 10408913  T
Q  256 tatgacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagttt 355  Q
    ||||| |||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||    
T  10408914 tatgatccatcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagttt 10409013  T
Q  356 gatacccacgaaaaccaaacaaccaccgacaagcat 391  Q
    || |||||| ||||||||| ||||||| ||||||||    
T  10409014 gagacccacaaaaaccaaataaccaccaacaagcat 10409049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 159 - 383
Target Start/End: Original strand, 5994622 - 5994846
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||  | ||||| ||| ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||| ||||||    
T  5994622 ccaaaatcaacatcaccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatat 5994721  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctcca-ccacaaccaagagagaaaagaaatcaaatagtttga 357  Q
    || |||||||||||||||||| ||||| || | || |||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||| |||||||    
T  5994722 gatccatcaccaccatcatgatcgatccattagca-ctatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttga 5994820  T
Q  358 tacccacgaaaaccaaacaaccaccg 383  Q
      |||||||||||||||||| |||||    
T  5994821 ggcccacgaaaaccaaacaatcaccg 5994846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 159 - 339
Target Start/End: Original strand, 6444027 - 6444208
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    ||||||||||  |||||| ||||||||||| |||||||||||||| ||||||| ||||||| | |||||||||||  || ||||| ||||||  | || |    
T  6444027 ccaaaatcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatct 6444126  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctcca-ccacaaccaagagagaaa 339  Q
    || ||||||||||| |  ||||| ||| || |||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  6444127 gatccatcaccacctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaa 6444208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 5994485 - 5994537
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  5994485 caccaaaactaccattaaccaccacaaaaatcaccattaaccctcaccaaaaa 5994537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 10408702 - 10408761
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||    
T  10408702 tcactaaaacaaccattgaccaccacaaaaaccaccattaactctcacctaaaagcaaca 10408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 15050214 - 15050162
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| || |||||| ||||||| ||||    
T  15050214 caccaaaactaccattaaccaccacaaaaaccatcattaatcctcaccaaaaa 15050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 567
Target Start/End: Original strand, 10409225 - 10409278
Alignment:
Q  514 gcggcggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttt 567  Q
    |||||||||||  ||||||| ||||||| |||||||| || |||||||||||||    
T  10409225 gcggcggatttagaatttgtttgaggaaaaaaggagtgcggcggttctaggttt 10409278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 3763089 - 3763045
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 67  Q
    ||||||||||||| ||||||||||||| || |||||| |||||||    
T  3763089 caaaactaccattaaccaccacaaaaaccatcattaatcctcacc 3763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 10409137 - 10409169
Alignment:
Q  480 agagagcaaccgcacgtcggaaaggtacagtgg 512  Q
    |||||||||||||||||||||||| ||||||||    
T  10409137 agagagcaaccgcacgtcggaaagatacagtgg 10409169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 25142902 - 25142954
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    ||||| |||||||||| ||||||||||||||||||| ||  ||||||| ||||    
T  25142902 caccacaactaccattaaccaccacaaaaatcaccactactcctcaccgaaaa 25142954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 186 - 391
Target Start/End: Original strand, 34117991 - 34118198
Alignment:
Q  186 ccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgaccgatc 285  Q
    |||||| | ||||||||  ||||||||||||||||||  |||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  34117991 ccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatc 34118090  T
Q  286 aatcaccacctatgttgcgagcagacataacctccac--cacaaccaagagagaaaagaaatcaaatagtttgatacccacgaaaaccaaacaaccaccg 383  Q
     |||||||||||||||||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| | ||| | |||||||||| ||||||||||||    
T  34118091 catcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaaccaccg 34118190  T
Q  384 acaagcat 391  Q
     |||||||    
T  34118191 gcaagcat 34118198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 39709029 - 39708920
Alignment:
Q  281 cgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgatacccacgaaaaccaaacaacca 380  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||  |||||||||||| || ||||| ||||||||||||||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 39708931  T
Q  381 ccgacaagcat 391  Q
    |||||||||||    
T  39708930 ccgacaagcat 39708920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 34655070 - 34655171
Alignment:
Q  282 gatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgatacccacgaaaaccaaacaaccac 381  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| |||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaacac 34655169  T
Q  382 cg 383  Q
    ||    
T  34655170 cg 34655171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 182 - 345
Target Start/End: Complemental strand, 11408092 - 11407928
Alignment:
Q  182 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgacc 281  Q
    |||||||||||| ||||||||| |||||||||||||||   |||||||||||  |  |||||||| |||| | || ||| ||||||||||| || || ||    
T  11408092 accaccatgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggcc 11407993  T
Q  282 gatcaatcaccacctatgttgcgagcagacataacctcca-ccacaaccaagagagaaaagaaat 345  Q
    |||| |||||||| ||||||||||||| |||||||||||| |||| |||||||||||||| ||||    
T  11407992 gatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 34654967 - 34655083
Alignment:
Q  156 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 255  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||| ||||||| |||| ||||||||  | ||||||||||||||||||    
T  34654967 gatccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctaga 34655066  T
Q  256 tatgacccatcaccacc 272  Q
    ||||| |||||||||||    
T  34655067 tatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 34654830 - 34654889
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654830 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 34654889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 26236781 - 26236671
Alignment:
Q  160 caaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatg 259  Q
    ||||||||| |||| || |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||  || ||||||| ||||| |||| ||    
T  26236781 caaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctg 26236682  T
Q  260 acccatcacca 270  Q
    | |||||||||    
T  26236681 atccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 39709105 - 39709015
Alignment:
Q  182 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccacc 272  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||| |||||||||| ||||| || |||||||||||    
T  39709105 accaccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 615825 - 615891
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagt 353  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||||||||||  |||||||||||    
T  615825 atcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt 615891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 615753 - 615826
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    ||||| |||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||||||| |||||||    
T  615753 ccaaattcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 39709243 - 39709180
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 82  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||    
T  39709243 tcacgaaaactaccattaaccaccacaaaaatcaccattaaccctcaccaaaaagaaatatcag 39709180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34117896 - 34117955
Alignment:
Q  17 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaac 77  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  34117896 catcaccaaaactaccattgaccgctacaaaaaccaccattaaccctcacc-aaaagcaac 34117955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 34118386 - 34118427
Alignment:
Q  527 aatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  34118386 aatttgtgtgaggaagaaaggagtacggcggtcctaggttta 34118427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 39708596 - 39708560
Alignment:
Q  514 gcggcggatttgaaatttgtgtgaggaagaaaggagt 550  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39708596 gcggcggatttgaaatttgggtgaggaagaaaggagt 39708560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 615638 - 615691
Alignment:
Q  25 aaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||  ||||||||||    
T  615638 aaactaccattgaccgccacaaaaggcaccattaaccatcactaaaaagcaaca 615691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 616108 - 616157
Alignment:
Q  519 ggatttgaaatttgtgtgaggaagaaaggagtacgccggttctaggttta 568  Q
    ||||||| ||||||||||||||||||||||||| | | || |||||||||    
T  616108 ggatttggaatttgtgtgaggaagaaaggagtagggcagtcctaggttta 616157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 11814695 - 11814744
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    ||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  11814695 caaaactaccattaaccatcacaaaaaccaccattaatcctcaccaaaaa 11814744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 2077531 - 2077483
Alignment:
Q  24 aaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    ||||||| |||| ||||||||||||| ||||||||| ||||||| ||||    
T  2077531 aaaactatcattaaccaccacaaaaaccaccattaatcctcaccaaaaa 2077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 14351226 - 14351174
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||| | ||||||||||||| |||||||||  |||||| ||||    
T  14351226 caccaaaactaccactaaccaccacaaaaaccaccattaattctcaccaaaaa 14351174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 39708690 - 39708650
Alignment:
Q  477 gatagagagcaaccgcacgtcggaaaggtacagtggagcgg 517  Q
    ||||||||||||||| ||||||||||||||| |||| ||||    
T  39708690 gatagagagcaaccgtacgtcggaaaggtacggtggtgcgg 39708650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 159 - 382
Target Start/End: Original strand, 3302567 - 3302790
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 258  Q
    |||||||||  ||||||| ||||||   ||||||| |||||| || || |||||||||||||||||||||| |||  |||| ||||||||| ||||||||    
T  3302567 ccaaaatcaacaccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatat 3302666  T
Q  259 gacccatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtttgat 358  Q
    ||   |||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||| |||     
T  3302667 gatgtatcaccaccatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgag 3302766  T
Q  359 acccacgaaaaccaaacaaccacc 382  Q
    | ||||||||||||||||||||||    
T  3302767 atccacgaaaaccaaacaaccacc 3302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 11698613 - 11698554
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698613 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 11698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3302427 - 3302486
Alignment:
Q  19 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  3302427 tcaccaaaactaccattgaccaccacaaaaaccaccattaacactcaccaaaaagcaaca 3302486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 31039000 - 31039052
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||| ||||    
T  31039000 caccaaaactaccattaaccaccacaaaaaccaccattactcctcaccgaaaa 31039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 18269836 - 18269763
Alignment:
Q  159 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 232  Q
    |||||||||  ||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18269836 ccaaaatcaacaccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43275830 - 43275890
Alignment:
Q  19 tcaccaaaactaccattgaccaccac-aaaaatcaccattaaccctcacctaaaagcaaca 78  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  43275830 tcaccaaaactaccattgaccaccacaaaaaaccaccattaaccctcaccaaaaagcaaca 43275890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 18269971 - 18269919
Alignment:
Q  14 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 66  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269971 catcgtcaccaaaacttccattgaccaccacaaaaaccaccattaaccatcac 18269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 18269764 - 18269711
Alignment:
Q  287 atcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaa 340  Q
    ||||||||||||||| ||| ||||||||||||||| || || ||||||||||||    
T  18269764 atcaccacctatgtttcgatcagacataacctccatcataatcaagagagaaaa 18269711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 31699221 - 31699270
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  31699221 caaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 31699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 43275999 - 43276045
Alignment:
Q  187 catgaagtaccacaaactaacacaaccaaagatccatcgaaaccata 233  Q
    ||||||| ||||||||| ||||||||||||||| |||||||| ||||    
T  43275999 catgaagcaccacaaaccaacacaaccaaagattcatcgaaatcata 43276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 31218 - 31261
Alignment:
Q  23 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 66  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31218 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 31261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 2938 - 2989
Alignment:
Q  20 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 72  Q
    |||||||||||||||| |||||||| |||||||||||||  ||||||| ||||    
T  2938 caccaaaactaccattaaccaccac-aaaatcaccattactcctcaccaaaaa 2989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University