View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17161_low_2 (Length: 642)
Name: NF17161_low_2
Description: NF17161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17161_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 11 - 580
Target Start/End: Original strand, 36792090 - 36792659
Alignment:
| Q |
11 |
cagagacatagttactgttttcggagacgtaggcactgttggacgaacatagtgattgattaatttgtcttctttatcggttttactaatgttcgaacct |
110 |
Q |
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| T |
36792090 |
cagagacatagtaactgttttcggagacgtaggcacagttggacgaacatagtgattaattaatttgtcttctttatcggttttactaatgttcgaacct |
36792189 |
T |
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| Q |
111 |
tatgtacgtgacatcaagttatcaatgtattgtccgttttgtgtatgtaatctctcctgatttggtcatttttaaatggcactttgatggatagcgacca |
210 |
Q |
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| T |
36792190 |
tatgtacgtgacatcaagttatcaatgtattgtccgttttgtgtatgtaatctcttctgatttggtcatttttaaatgtcactttgatgaatagcgacca |
36792289 |
T |
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| Q |
211 |
aagtgtgttttgtctataaactttcatcaacctcgattctcaaatagtagcccccgagtcaaagttaaagggatatagagcatgtcatcccttgatcgag |
310 |
Q |
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| T |
36792290 |
gagtgtgtgttgtctataaactttcatcaacctcgattctcaaatagtagctcccgagtcaaagttaaagggatatagagcatgtcatcccttgatcgag |
36792389 |
T |
|
| Q |
311 |
tgtgggataggtacgacccatgtctgaagtatcaatgtttcgacattaagttcaagatactacgttttttagatattgtcttatttaggtcttgtgtgta |
410 |
Q |
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| T |
36792390 |
tgtgggataggtacgacccatgtctgaagtgtcaatatttcgacattaagttcaagatactacgttttttagatattgtcttatttaggtcttgtgtgta |
36792489 |
T |
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| Q |
411 |
agacgtcgcggtgaataaagtgagagtgtttcacataaacgactcgtagcttcgattttcaaataaaaatgtaagacttttttagtgtaccgaaataatt |
510 |
Q |
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| T |
36792490 |
agacatcgcggtgaataaagtgagagtgtttcacataaacgactcgtagcttcgattctcatataacaatgtaagacttttttaatgtaccgaaataatt |
36792589 |
T |
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| Q |
511 |
tgtttctctttagtttttccatttgatatttctcaactatttgtctatcatggaccctgtaatattcctt |
580 |
Q |
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| T |
36792590 |
tgtttctctttagttttttcatttgatatttctcaactatttgtctatcatgaaccctgtaatattcctt |
36792659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 563
Target Start/End: Original strand, 36785944 - 36786173
Alignment:
| Q |
335 |
tgaagtatcaatgtttcgacattaagttcaagatactacgttttttagatattgtcttatttaggtcttgtgtgtaagacgtcgcggtgaataaagtgag |
434 |
Q |
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| T |
36785944 |
tgaagtgttaatgtttcgacattaagtccaagacaccacgtttttgagatattgtctaatttagatcttgtgtgtgaatcatcatgatggataaagtgtg |
36786043 |
T |
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| Q |
435 |
agtgtttcacataaacgactcgtagcttcgattttcaaataaaaatgtaagactt-ttttagtgtaccgaaataatttgtttctctttagtttttccatt |
533 |
Q |
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| T |
36786044 |
agtgtttcatataaactattagtagcttctattctaaaataacaaagtagaacttgttttagtgtaccaaaataattagttcattaaaagttttgttatt |
36786143 |
T |
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| Q |
534 |
tgatatttctcaactatttgtctatcatgg |
563 |
Q |
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| T |
36786144 |
tgatatttctcaaccctttgtctctcatgg |
36786173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 36784073 - 36784123
Alignment:
| Q |
154 |
tatgtaatctctcctgatttggtcatttttaaatggcactttgatggatag |
204 |
Q |
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| T |
36784073 |
tatgtaaactcttctgatttgatcctttttaaaaggcactttgatggatag |
36784123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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