View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_1 (Length: 1119)
Name: NF17162_high_1
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 984; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 984; E-Value: 0
Query Start/End: Original strand, 15 - 1101
Target Start/End: Original strand, 29357065 - 29358154
Alignment:
| Q |
15 |
taatacttaaactaaaatgttttgtgagctttttgaaatttgtattttgcattttagcatttaggttatgaaaattgatgtttatttcgttcgagtggta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357065 |
taatacttaaactaaaatgttttgtgagctttttgaaatttgtattttgcattttagcatttaggttatgaaaattgatgtttatttcgttcgagtggta |
29357164 |
T |
|
| Q |
115 |
atggacttcaccttgtgtggaaaaccttgttattcaatccctgacttgcatatggagataacatgattgggtaaggagaatttacgccgtgtccaacaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29357165 |
atggacttcaccttgtgtggaaaaccttgttattcaatccctgacttgcatatggagataacatgattgggtaaggagaatttacgccatgtccaacaag |
29357264 |
T |
|
| Q |
215 |
ttcttcgatatagattagtcattactaatcatgatcatgaaaaactcttcgaatcaaaaactataccagttcacacaagaaaaaattgagatatcaatca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357265 |
ttcttcgatatagattagtcattactaatcatgatcatgaaaaactcttcgaatcaaaaactataccagttcacacaagaaaaaattgagatatcaatca |
29357364 |
T |
|
| Q |
315 |
atgagtataacaggaattttcaaggcaattcttgataaacaagtaaaaatatatcaaataacaactcattccaaaacgatatttattcaacttnnnnnnn |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357365 |
atgagtataacaggaattttcaaggcaattcttgataaacaagtaaaaatatatcaaataacaactcattccaaaacgatatttattcaacttaaaaaaa |
29357464 |
T |
|
| Q |
415 |
cttacagaaatcaaacacacttataaacaagacagatacaaagtgatgacacaaagaaacaaacatgcaaatcccagaccatggacaaatccacagtcac |
514 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29357465 |
cttacagaaatcaaacactcttataaacaagacagatacaaagtgatgaaacaaagaaacaaacatgcaaatccc-gaccatggacaaatccacagtcac |
29357563 |
T |
|
| Q |
515 |
ttatttttagtcttaattcatatcaaaacacaatgacaataacaaccaaatacaaagcgatggtaacaagtaacaaccacatgacgcttcaacggaaaaa |
614 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29357564 |
tta-ttttagtcttaattcatatcaaaacacaatgac-ataacaaccaaatacaaagcgatggtaaaaagtaacaaccacatgacgcttcaacggaaaaa |
29357661 |
T |
|
| Q |
615 |
tggatttggccaaaacccatttgggggattgacatttcccataggaggtgcctgatccccaccaccattattcatcaagttcatnnnnnnntgttgcttc |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29357662 |
tggatttggccaaaacccatttgggggattgacatttcccatgggaggtgcctgatccccaccaccattattcatcaagttcataaaaaaatgttgcttc |
29357761 |
T |
|
| Q |
715 |
tgcataacatccatgttcatgtccaaaacatgttgaccgtgactcccttgtccattctcttcaatcttaggtactggattagccaccattgttgatgcta |
814 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357762 |
tgcataacatccatgttcatgtccaaaacatgttgaccgtgactcccttgtccattctcttcaatcttaggtactggattagccaccattgttgatgcta |
29357861 |
T |
|
| Q |
815 |
cca------tttgagtttgagtttgaccttgaccttgaccattcctgctcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaacca |
908 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357862 |
ccatttgagtttgagtttgagtttgaccttgaccttgaccattcctgctcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaacca |
29357961 |
T |
|
| Q |
909 |
tgccatatcattcaaatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcc |
1008 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357962 |
tgccatatcattcaaatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcc |
29358061 |
T |
|
| Q |
1009 |
tttctttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattca |
1101 |
Q |
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| T |
29358062 |
tttctttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattca |
29358154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 923 - 1101
Target Start/End: Original strand, 33046128 - 33046306
Alignment:
| Q |
923 |
aatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcctttctttgtttagt |
1022 |
Q |
| |
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|||||||||| ||||| |||| ||||| || | | ||||||| || |||||||| | ||||||||||| |||||||||||||| || |||||||| || |
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| T |
33046128 |
aatcaaccatacttatgttgtccataagtttacctgcactaatatattgaaacatgagatgagtcatttccttttctctattatctttcctttgttttgt |
33046227 |
T |
|
| Q |
1023 |
caattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattca |
1101 |
Q |
| |
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|||||| |||||||||||||| || | || || | |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33046228 |
caattgctctttcgccttttggattctttgtcttagaaaactctcttgattcaccatctttttgctttgttccaattca |
33046306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 857 - 909
Target Start/End: Original strand, 33046085 - 33046137
Alignment:
| Q |
857 |
tcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaaccat |
909 |
Q |
| |
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|||||||||||||||| ||||| || |||||||| || ||||||||||||||| |
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| T |
33046085 |
tcaacatttcaacccttctattaatctctttcaagtattgatcaatcaaccat |
33046137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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