View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_12 (Length: 482)
Name: NF17162_high_12
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 43713347 - 43712879
Alignment:
| Q |
1 |
ataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaat |
100 |
Q |
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| T |
43713347 |
ataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaat |
43713248 |
T |
|
| Q |
101 |
aaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatgagcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggttag |
200 |
Q |
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| T |
43713247 |
aaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggttag |
43713148 |
T |
|
| Q |
201 |
gagttaaagttgaaatactgagtggctatgaggcaaaaagcattaacaagcaatatttttaaatattttccaaatgacaaagttccatactcaagcaaat |
300 |
Q |
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| T |
43713147 |
gagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaagcaatatttttaaatattttccaaatgacaaagttccatactcaagcaaat |
43713048 |
T |
|
| Q |
301 |
gtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaagcaatccatgaacaagagaagctatatgtaaggattagtcaaatccttaaccaa |
400 |
Q |
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| T |
43713047 |
gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatgaacaagagaagctatatgtaaggattagtcaaatccttaaccaa |
43712948 |
T |
|
| Q |
401 |
gggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatttgtgtccct |
469 |
Q |
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| T |
43712947 |
gggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatttgtgtccct |
43712879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 249 - 469
Target Start/End: Complemental strand, 42572412 - 42572183
Alignment:
| Q |
249 |
agcaatatttttaaatattttccaaatgacaaagt-tccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaag |
347 |
Q |
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| T |
42572412 |
agcaatatttttaaataatttccaaatgacaaaaaatccatactcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaag |
42572314 |
T |
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| Q |
348 |
caatccatgaacaagagaagctat-----atgtaaggattagtcaaatccttaaccaagggatttagcttcccctc----ttatttatttattaggatta |
438 |
Q |
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| T |
42572313 |
caatccatgaacaaaagaagctataattaatgtaaggattagtcaaatacttaatcaagggattttgcttctccccttatttatttatttattaggatta |
42572214 |
T |
|
| Q |
439 |
tgattccgttagttacgaaatttgtgtccct |
469 |
Q |
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| T |
42572213 |
tgattccattagttaagaaatttgtgtccct |
42572183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 414
Target Start/End: Complemental strand, 42597667 - 42597480
Alignment:
| Q |
230 |
gaggcaaaaagcattaacaag-caatatttttaaatattttccaaatgacaaag--ttccatactcaagcaaatgtaaactgtgtctgtgtccaagtact |
326 |
Q |
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|||||||||||||| || || || |||||||||||| | | ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||| | |
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| T |
42597667 |
gaggcaaaaagcataaaaaaaacattatttttaaataatattcaaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtccaagtatt |
42597569 |
T |
|
| Q |
327 |
tcccaggaaggaaacagtaagcaatccatgaacaagagaagcta-----tatgtaaggattagtcaaatccttaaccaagggatttagcttcc |
414 |
Q |
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| T |
42597568 |
t----ggcaggaaacattaagcaatccatgaaaaagagaagctagaattcatgtaaggattagtcaaatccttaaccgagggatttaccttcc |
42597480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 42572532 - 42572471
Alignment:
| Q |
11 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataat |
72 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaaccgtgatgttacatataat |
42572471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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