View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_high_14 (Length: 471)
Name: NF17162_high_14
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_14 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 24015 - 24134
Alignment:
| Q |
119 |
tgttattttttctggattgnnnnnnnattgatacaattattcattttgaaaccaggtactgaagctgcaaccaggaacaagggagcatatgcttcta-ct |
217 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
|
|
| T |
24015 |
tgttattttttctggattgcttgtttgttgatacattgattcattttgaaaccaggtactgaagctgcacccaggaacaagggagcagctgcttctacct |
24114 |
T |
|
| Q |
218 |
aagtctttggaactttgctt |
237 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
24115 |
aagtcttcggaacgttgctt |
24134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University