View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_18 (Length: 406)

Name: NF17162_high_18
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_18
NF17162_high_18
[»] chr3 (17 HSPs)
chr3 (38-218)||(6232729-6232915)
chr3 (16-191)||(6261065-6261245)
chr3 (74-176)||(6270620-6270734)
chr3 (244-306)||(40892828-40892890)
chr3 (49-126)||(6135409-6135486)
chr3 (49-126)||(6138130-6138207)
chr3 (252-307)||(52762996-52763051)
chr3 (65-131)||(6163232-6163298)
chr3 (21-107)||(6132296-6132379)
chr3 (240-291)||(53653144-53653194)
chr3 (49-107)||(13284226-13284284)
chr3 (240-295)||(38832986-38833043)
chr3 (252-308)||(50662444-50662500)
chr3 (244-307)||(29793460-29793523)
chr3 (244-307)||(36754763-36754826)
chr3 (242-295)||(32497810-32497863)
chr3 (240-285)||(51490200-51490245)
[»] chr6 (5 HSPs)
chr6 (240-307)||(31330550-31330617)
chr6 (243-306)||(9245959-9246022)
chr6 (261-307)||(11393716-11393762)
chr6 (261-300)||(2667397-2667436)
chr6 (240-292)||(30533694-30533747)
[»] chr2 (7 HSPs)
chr2 (244-307)||(25749704-25749767)
chr2 (253-307)||(45716464-45716518)
chr2 (244-307)||(6599360-6599424)
chr2 (244-295)||(7820060-7820111)
chr2 (252-307)||(8329693-8329748)
chr2 (243-286)||(9620621-9620664)
chr2 (244-307)||(33635726-33635789)
[»] chr1 (6 HSPs)
chr1 (244-307)||(963988-964051)
chr1 (240-307)||(14171845-14171912)
chr1 (244-307)||(26127295-26127358)
chr1 (240-294)||(19998568-19998622)
chr1 (240-294)||(26537512-26537567)
chr1 (243-292)||(31820745-31820794)
[»] chr7 (7 HSPs)
chr7 (240-306)||(30898064-30898130)
chr7 (240-308)||(34224285-34224353)
chr7 (244-307)||(45879147-45879210)
chr7 (240-308)||(9047126-9047193)
chr7 (244-291)||(6221079-6221125)
chr7 (261-307)||(28359738-28359784)
chr7 (240-277)||(8919414-8919451)
[»] scaffold0007 (1 HSPs)
scaffold0007 (240-295)||(185476-185531)
[»] chr8 (6 HSPs)
chr8 (244-307)||(13015391-13015454)
chr8 (240-307)||(41013275-41013342)
chr8 (240-292)||(18087225-18087277)
chr8 (243-295)||(33986891-33986943)
chr8 (240-291)||(16938928-16938979)
chr8 (240-283)||(27924512-27924555)
[»] chr5 (6 HSPs)
chr5 (244-307)||(932149-932212)
chr5 (244-307)||(26440118-26440181)
chr5 (244-306)||(8590149-8590211)
chr5 (252-306)||(26295533-26295587)
chr5 (242-290)||(5091816-5091864)
chr5 (264-308)||(24181835-24181879)
[»] chr4 (5 HSPs)
chr4 (240-307)||(1955320-1955388)
chr4 (247-291)||(47742774-47742818)
chr4 (240-295)||(1051818-1051873)
chr4 (252-295)||(12763405-12763448)
chr4 (244-300)||(34015758-34015814)
[»] scaffold0191 (1 HSPs)
scaffold0191 (240-307)||(4572-4639)
[»] scaffold0257 (1 HSPs)
scaffold0257 (240-306)||(18854-18922)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 6232729 - 6232915
Alignment:
Q  38 gattgcacccatcattggt---ttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatcatgagttggaattaattgatcaccattc 134  Q
    |||||||||||||||||||   ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6232729 gattgcacccatcattggtggtttgtagccggggtctcagatacctggaatgagattctgtatccgtcaatcatgagttggaattaattgatcacaattc 6232828  T
Q  135 aaca-----ttacattgatgttacattttgcatagtctatgagaaaattttactaccaataattacacatgaaaattactttcatcaaa 218  Q
    | ||     |||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  6232829 agcaatggtttacgtggatgttacattttgcatagtctacgagagaattttactaccaataattacaca--aaaattactttcatcaaa 6232915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 6261065 - 6261245
Alignment:
Q  16 aaaagatggcttccatggcatggattgcacccatcattggtttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatcatgagttgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||  |||||| ||||||||| ||| ||||||||||||||||||| |||    
T  6261065 aaaagatggcttccatggcatggattgcacccatcattggtgtgccgcaggggttccagatagttggaatgacattttgtatgcgtcaatcatgagctgg 6261164  T
Q  116 aattaattgatcaccattcaaca-----ttacattgatgttacattttgcatagtctatgagaaaattttactaccaataa 191  Q
    |||||||||||||||| ||| ||     |||||| ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  6261165 aattaattgatcaccaatcagcaatggtttacatggatgttacattttgcatagtccatgagaaaactttattaccaataa 6261245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 6270620 - 6270734
Alignment:
Q  74 gatacttggaatgagattctgtatgcgtcaatcatga-------gttggaattaattgatcaccattcaaca-----ttacattgatgttacattttgca 161  Q
    |||| |||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||     |||||| ||||||||||||||||    
T  6270620 gatagttggaatgagattctgtatgggtcaatcatgactcatgggttggaattaattgatcaccattcaacaatggtttacatggatgttacattttgca 6270719  T
Q  162 tagtctatgagaaaa 176  Q
    ||||| |||||||||    
T  6270720 tagtccatgagaaaa 6270734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 40892828 - 40892890
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  40892828 aaattgtgtattctactttttgaaagttaataaagtgttcttttcaatgcaaaacttgacttt 40892890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 6135409 - 6135486
Alignment:
Q  49 tcattggtttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatcatgagttggaattaattgat 126  Q
    |||||||| | ||||||||||| |||||||||||||||||||||| ||||| |||||||| | || ||||||| ||||    
T  6135409 tcattggtgtatagcaggggtcccagatacttggaatgagattctctatgcatcaatcataaattagaattaagtgat 6135486  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 6138130 - 6138207
Alignment:
Q  49 tcattggtttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatcatgagttggaattaattgat 126  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||||||| || || ||||||| ||||    
T  6138130 tcattggtgtatagcaggagtcccagatacttggaatgagattctgtatgcatcaatcacgaattagaattaagtgat 6138207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 52762996 - 52763051
Alignment:
Q  252 tattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    |||||||| | |||||||||||||||| |||||||||||||||| |||||||||||    
T  52762996 tattctacttcttgaaagttaaaaaagagttcttttcaatgcaaaacttgactttt 52763051  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 6163232 - 6163298
Alignment:
Q  65 ggggtctcagatacttggaatgagattctgtatgcgtcaatcatgagttggaattaattgatcacca 131  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||| || ||||||| |||| ||||    
T  6163232 ggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattacca 6163298  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 6132296 - 6132379
Alignment:
Q  21 atggcttccatggcatggattgcacccatcattggtttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatca 107  Q
    |||||||||||||||||||||| || |||   |||| |||||| |||||  ||||||||||||||||| || ||||||| |||||||    
T  6132296 atggcttccatggcatggattgtacacat---tggtgtgtagctggggtaccagatacttggaatgagcttttgtatgcatcaatca 6132379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 53653144 - 53653194
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaat 291  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  53653144 ttgaaaattgtgtattctacttttt-aaagttaaaaaagtgttcttttcaat 53653194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 13284284 - 13284226
Alignment:
Q  49 tcattggtttgtagcaggggtctcagatacttggaatgagattctgtatgcgtcaatca 107  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  13284284 tcattggtgtatagcaggagtcccagatacttggaatgagattctttatgcatcaatca 13284226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 38832986 - 38833043
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaag--tgttcttttcaatgcaa 295  Q
    ||||||||| | |||||||| ||||||||||||||||||  |||||||||||||||||    
T  38832986 ttgaaaattatgtattctactttttgaaagttaaaaaagtatgttcttttcaatgcaa 38833043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 50662500 - 50662444
Alignment:
Q  252 tattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttta 308  Q
    |||||||| |||||||||| |||||| ||||||||||||| ||| | ||||||||||    
T  50662500 tattctactttttgaaagtcaaaaaaatgttcttttcaatacaaaatttgactttta 50662444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 29793460 - 29793523
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||| ||| |||| |||||||||||||||||||||| |||| || | |||||||||    
T  29793460 aaattgtgtattttactttttaaaagttaaaaaagtgttctttttaatgtaaaatttgactttt 29793523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 36754763 - 36754826
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    |||||||||||| ||  | || ||||||||||||||||||||||||| |||| |||||| ||||    
T  36754763 aaattgtatattatatctatttaaagttaaaaaagtgttcttttcaacgcaaaacttgagtttt 36754826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 32497863 - 32497810
Alignment:
Q  242 gaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    ||||||||| |||| ||| ||||||||||| ||||| |||| ||||||||||||    
T  32497863 gaaaattgtgtattatactttttgaaagtttaaaaaatgttattttcaatgcaa 32497810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 51490245 - 51490200
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttctt 285  Q
    ||||||||| | |||| ||| |||||||||||||||||||||||||    
T  51490245 ttgaaaattttgtattataccttttgaaagttaaaaaagtgttctt 51490200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 31330550 - 31330617
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||  || |||||||||||    
T  31330550 ttgaaaattgtgtattctactttttgaaagttaaaaaagtgttctttttaatataaaacttgactttt 31330617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 9246022 - 9245959
Alignment:
Q  243 aaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    ||||||||  ||||||| |||||||||||||||||||||| |||||||| ||| | ||||||||    
T  9246022 aaaattgtgcattctactttttgaaagttaaaaaagtgttattttcaatacaaaaattgacttt 9245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 11393716 - 11393762
Alignment:
Q  261 ttttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||||    
T  11393716 ttttgaaagttaaaaaagtgttcttttcgatgcaaaacttgagtttt 11393762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 2667397 - 2667436
Alignment:
Q  261 ttttgaaagttaaaaaagtgttcttttcaatgcaacactt 300  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  2667397 tttttaaagttaaaaaagtgttcttttcaatgcaaaactt 2667436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 30533747 - 30533694
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagtt-aaaaaagtgttcttttcaatg 292  Q
    ||||||||||| |||||||| ||||||||||| ||||||| ||| |||||||||    
T  30533747 ttgaaaattgtgtattctactttttgaaagttgaaaaaagagttattttcaatg 30533694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 25749704 - 25749767
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  25749704 aaattgtgtattctattttttgaaagttaaaaaagtgttcttttcaatgcaaaactttactttt 25749767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 45716518 - 45716464
Alignment:
Q  253 attctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| | |||||||||    
T  45716518 attctactttttgaaagttaaaaaagtgttattttcaatacaaaatttgactttt 45716464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 6599424 - 6599360
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaag-tgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||| ||| |||||||||||||||||  ||| ||||||||||||| |||||||||||    
T  6599424 aaattgtgtattatactttttgaaagttaaaaaaaatgtacttttcaatgcaaaacttgactttt 6599360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 7820060 - 7820111
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    |||||||||||||||| ||||||||||||||||| | || | ||||||||||    
T  7820060 aaattgtatattctactttttgaaagttaaaaaaatattatgttcaatgcaa 7820111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 8329693 - 8329748
Alignment:
Q  252 tattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    |||||||| |||||||||||||||  |||||||||| ||||||| |||||| ||||    
T  8329693 tattctactttttgaaagttaaaatggtgttctttttaatgcaaaacttgaatttt 8329748  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 9620664 - 9620621
Alignment:
Q  243 aaaattgtatattctacattttgaaagttaaaaaagtgttcttt 286  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    
T  9620664 aaaattgtatattctactttttaaaaattaaaaaagtgttcttt 9620621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 33635726 - 33635789
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| |||| |||||||||||||| |||||||| ||  || |||||||||||    
T  33635726 aaattgtgtattctactttttaaaagttaaaaaagtattcttttcgatataaaacttgactttt 33635789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 963988 - 964051
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||||| || |||| ||||||    
T  963988 aaattgtgtattctactttttcaaagttaaaaaagtgttcttttcaatgtaaaacttaactttt 964051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 14171845 - 14171912
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||||||| |||| ||| ||||||||||||||||| |||| |||||||||||| |||| ||||||    
T  14171845 ttgaaaattgtgtattttactttttgaaagttaaaaaaatgtttttttcaatgcaaaacttcactttt 14171912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 26127295 - 26127358
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||||| || | |||||||||    
T  26127295 aaattgtgtattctactttttgaaagttaaaaaagtgttattttcaatgtaaaatttgactttt 26127358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 19998622 - 19998568
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgca 294  Q
    ||||||||||| ||||||| ||||| |||||||||||| ||| ||||||||||||    
T  19998622 ttgaaaattgtgtattctatattttaaaagttaaaaaattgtacttttcaatgca 19998568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 26537512 - 26537567
Alignment:
Q  240 ttgaaaattgtatatt-ctacattttgaaagttaaaaaagtgttcttttcaatgca 294  Q
    |||||||||||||||| |||| |||  ||||||||||||||||| |||||||||||    
T  26537512 ttgaaaattgtatattactacttttctaaagttaaaaaagtgttattttcaatgca 26537567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 31820745 - 31820794
Alignment:
Q  243 aaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatg 292  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||| ||||    
T  31820745 aaaattgtatattctactttttaaaagttcaaaacgtgttctttttaatg 31820794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 30898130 - 30898064
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    ||||||| |||| ||||||| ||||||||||||||||  |||||||| |||||||| ||||||||||    
T  30898130 ttgaaaactgtacattctactttttgaaagttaaaaagatgttctttccaatgcaaaacttgacttt 30898064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 34224353 - 34224285
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttta 308  Q
    |||||||||||||||||||| |||| |||||| |||||||||| |||| ||||||| | ||||| ||||    
T  34224353 ttgaaaattgtatattctactttttcaaagttgaaaaagtgttatttttaatgcaaaagttgacattta 34224285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 45879147 - 45879210
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| ||||||||| |||||| ||||| |||||||| ||| |||||||||||    
T  45879147 aaattgtgtattctactttttgaaaggtaaaaatgtgtttttttcaatacaaaacttgactttt 45879210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 9047126 - 9047193
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttta 308  Q
    |||||||||||  ||||||| |||||||||||||||||||||| |||| |||| || |||| |||||||    
T  9047126 ttgaaaattgtggattctactttttgaaagttaaaaaagtgtt-tttttaatgtaaaacttaactttta 9047193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 6221125 - 6221079
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaat 291  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||    
T  6221125 aaattgtatattctactttttgaaagtta-aaaagtattcttttcaat 6221079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 28359738 - 28359784
Alignment:
Q  261 ttttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    |||||||||||||||||||| | |||||||||||| | |||||||||    
T  28359738 ttttgaaagttaaaaaagtgatattttcaatgcaaaatttgactttt 28359784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 8919414 - 8919451
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaa 277  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  8919414 ttgaaaattgtatattctatattttaaaagttaaaaaa 8919451  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 185531 - 185476
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    ||||||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||    
T  185531 ttgaaaattgtgtattctactttttgaaaattagaaaagtgatcttttcaatgcaa 185476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 13015454 - 13015391
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| |||||||| ||||||||||||| |||| ||||||| |||| ||||||    
T  13015454 aaattgtgtattctactttttgaaaattaaaaaagtgttgtttttaatgcaaaacttaactttt 13015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 41013275 - 41013342
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||||||| |||||| | | ||||||||||||||| | ||||||||||||||| |||| ||||||    
T  41013275 ttgaaaattgtgtattcttcttcttgaaagttaaaaaaatattcttttcaatgcaaaacttaactttt 41013342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 18087277 - 18087225
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatg 292  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||||| ||||    
T  18087277 ttgaaaattgtgtattctactttttgaaagtcaaaacagtgttctttttaatg 18087225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 33986891 - 33986943
Alignment:
Q  243 aaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    |||||||| |||| ||| ||||||||||||||| ||||||||||| |||||||    
T  33986891 aaaattgtgtattttactttttgaaagttaaaatagtgttctttttaatgcaa 33986943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 16938928 - 16938979
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaat 291  Q
    ||||||||||| |||||||| |||| ||||||||||||||| | ||||||||    
T  16938928 ttgaaaattgtgtattctacttttttaaagttaaaaaagtgctgttttcaat 16938979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 27924512 - 27924555
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttc 283  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    
T  27924512 ttgaaaattatgtattctactttttgaaagttaaaaaagtgttc 27924555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 932149 - 932212
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||| ||| |||| |||||||||||| ||||||||||||||||| |||||| ||||    
T  932149 aaattgtgtattttacttttttaaagttaaaaaaatgttcttttcaatgcaaaacttgattttt 932212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 26440118 - 26440181
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||| |||||||| |||| ||||||||||||||||| |||| ||||||| | |||||||||    
T  26440118 aaattgtgtattctactttttaaaagttaaaaaagtgttatttttaatgcaaaatttgactttt 26440181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 8590149 - 8590211
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    ||||||| |||| ||| |||| ||||||||||||||||| |||||||||||| | ||||||||    
T  8590149 aaattgtgtattttaccttttaaaagttaaaaaagtgttattttcaatgcaaaatttgacttt 8590211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 26295587 - 26295533
Alignment:
Q  252 tattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    |||||||  |||| |||||||||||| |||||||||||||| || ||||||||||    
T  26295587 tattctattttttaaaagttaaaaaaatgttcttttcaatgtaaaacttgacttt 26295533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 5091816 - 5091864
Alignment:
Q  242 gaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaa 290  Q
    ||||||||| |||| ||| ||||||||||| |||||||| |||||||||    
T  5091816 gaaaattgtgtattatactttttgaaagttgaaaaagtgctcttttcaa 5091864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 24181835 - 24181879
Alignment:
Q  264 tgaaagttaaaaaagtgttcttttcaatgcaacacttgactttta 308  Q
    |||||||| ||||||||||||||||||||||| | || |||||||    
T  24181835 tgaaagttcaaaaagtgttcttttcaatgcaaaatttaactttta 24181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 1955320 - 1955388
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagtt-aaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||||||||||||| || |||| |||||| |||||||||||||||| |||| || | |||||||||    
T  1955320 ttgaaaattgtatattcgacttttttaaagttaaaaaaagtgttctttttaatgaaaaatttgactttt 1955388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 47742818 - 47742774
Alignment:
Q  247 ttgtatattctacattttgaaagttaaaaaagtgttcttttcaat 291  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||    
T  47742818 ttgtgtattatacattttaaaagttaaaaaagtgttcttttcaat 47742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 1051818 - 1051873
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    ||||||||||| |||||||  |||| |||||||||||| || ||||||||||||||    
T  1051818 ttgaaaattgtgtattctatgttttaaaagttaaaaaattgctcttttcaatgcaa 1051873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 12763448 - 12763405
Alignment:
Q  252 tattctacattttgaaagttaaaaaagtgttcttttcaatgcaa 295  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||    
T  12763448 tattctactttttgaaagttaagaaagtgttattttcaatgcaa 12763405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 34015758 - 34015814
Alignment:
Q  244 aaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacactt 300  Q
    |||||||||||||||| ||||||||  |||||| ||||| |||||||| ||| ||||    
T  34015758 aaattgtatattctactttttgaaaaataaaaaggtgtttttttcaatacaaaactt 34015814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 4572 - 4639
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagttaaaaaagtgttcttttcaatgcaacacttgactttt 307  Q
    ||||||||||| ||||| || ||||||||||||| ||| ||||||||| ||| ||  |||||||||||    
T  4572 ttgaaaattgtgtattccactttttgaaagttaataaaatgttctttttaatacagaacttgactttt 4639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 18854 - 18922
Alignment:
Q  240 ttgaaaattgtatattctacattttgaaagtt--aaaaaagtgttcttttcaatgcaacacttgacttt 306  Q
    ||||||||| | |||||||| |||||||||||  |||||| ||||||||| ||||||| | ||||||||    
T  18854 ttgaaaattatgtattctactttttgaaagttgaaaaaaaatgttctttttaatgcaaaatttgacttt 18922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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