View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_2 (Length: 779)
Name: NF17162_high_2
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_2 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 133 - 764
Target Start/End: Complemental strand, 54619120 - 54618487
Alignment:
| Q |
133 |
aggggaggtaagctattgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
232 |
Q |
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| T |
54619120 |
aggggaggtaagctattgcagtgaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
54619021 |
T |
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| Q |
233 |
ggtgcgagggctatcgctttcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
332 |
Q |
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| T |
54619020 |
ggtgcgaggg---tcgctgtcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
54618924 |
T |
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| Q |
333 |
ggtttgcgtaaacaaaaattgtgttcattgtattgcgatttatgattcttttattcnnnnnnnnnnn-----actaatgattcttttatcattttgttac |
427 |
Q |
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| T |
54618923 |
ggtttgcgtaaacaaagattgtgttcattgtattgcgatttatgattcttttattcttttttctttttttttactaatgattcttttatcattttgttac |
54618824 |
T |
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| Q |
428 |
tagttgttcttacagattataannnnnnngtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagacccatttaagaa |
527 |
Q |
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| T |
54618823 |
tagttgttcttacagattataatttttttgtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagatccatttaagga |
54618724 |
T |
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| Q |
528 |
tataatttatgttttttatacgcatcggtcgggaatcgaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgt |
627 |
Q |
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| T |
54618723 |
tataatttatgttttttatacgcatcggtcgggaatcaaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgt |
54618624 |
T |
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| Q |
628 |
taatcgattataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtgttttgcattttaacatatgtatatctaatttgaatgtg |
727 |
Q |
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| T |
54618623 |
taatcgattataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtgttttgcattttaacatatgtatatctaatttgaatgtg |
54618524 |
T |
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| Q |
728 |
taaaagaaaggagaatggagttaagatgtattgatat |
764 |
Q |
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| T |
54618523 |
taaaagaaatgagaatgaagttaagatgtattgatat |
54618487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 54619629 - 54619520
Alignment:
| Q |
31 |
gggtggactaatgcagatgaaataagttgaatcatacaacaaactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
130 |
Q |
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| T |
54619629 |
gggtggactaatgcagatgaaataagttgaatcatacaacagactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
54619530 |
T |
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| Q |
131 |
gcaggggagg |
140 |
Q |
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| T |
54619529 |
gcaggggagg |
54619520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 13951061 - 13951107
Alignment:
| Q |
157 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
203 |
Q |
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| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
13951107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 3201 - 3247
Alignment:
| Q |
157 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
203 |
Q |
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| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
3247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 6938287 - 6938345
Alignment:
| Q |
153 |
gtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattg |
211 |
Q |
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| T |
6938287 |
gtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
6938345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 39129296 - 39129349
Alignment:
| Q |
155 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaa |
208 |
Q |
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| T |
39129296 |
gaagctccctccacccatgcccttgtgtttgggtcaaacgtgtgttaggcccaa |
39129349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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