View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_22 (Length: 380)
Name: NF17162_high_22
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 43224122 - 43224316
Alignment:
| Q |
36 |
tgctcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatattgtagtaaaattagatatgatatttacactcaa |
135 |
Q |
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| T |
43224122 |
tgctcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---ttgtagtaaaattagatatgatatttacactcaa |
43224218 |
T |
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| Q |
136 |
caacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaacaaccatcgttaatttcctgatgccacaaaat |
233 |
Q |
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| T |
43224219 |
caacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaacaatcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 43224465 - 43224542
Alignment:
| Q |
287 |
tatcgaaaggggtttctttttatttggtacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaac |
364 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224465 |
tatcgaaaggggtttctttttatttggcacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaac |
43224542 |
T |
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