View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_24 (Length: 376)
Name: NF17162_high_24
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 2513550 - 2513911
Alignment:
| Q |
1 |
caattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgtgaatatattggagaggttcttgaagaaaaggaagccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2513550 |
caattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgtgaatatattggagaggttcttgaagaaaaggaagctgaa |
2513649 |
T |
|
| Q |
101 |
caaagaaccagtaatgatgagtatcttttcgatatcggaaataacaaaaacaataataatctttgggatgaactttcaaacctttttccaaattcacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2513650 |
caaagaaccagtaatgatgagtatcttttcgatatcggaaataacaaaaacaataataatctttgggatggactttcaaacctttttccaaattcacact |
2513749 |
T |
|
| Q |
201 |
caagttcaagtgatgtagtgaaggattttgactttacgatcgatggcgctcggtttggtaatgtggggagatttgttaaccatagttgctcccctaatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2513750 |
caagttcaagtgatgtagtgaaggattttgactttacgatcgatggcgctcagtttggtaatgtggggagatttgttaaccatagttgctcccctaatct |
2513849 |
T |
|
| Q |
301 |
atatgctcagaatgtcctttatgatcatcaagacagcagggttcctcacatcatgttatttg |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2513850 |
atatgctcagaatgtcctttatgatcatcaagacaccagggttcctcacatcatgttatttg |
2513911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 2497385 - 2497740
Alignment:
| Q |
2 |
aattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgtgaatatattggagaggttcttgaagaaaaggaagccgaac |
101 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2497385 |
aattcaatgggatggggtgtaagatccttaaattccatcccttcaggaagttttatctgtgaatatattggagaggttcttgaagaaaaggaagctgaac |
2497484 |
T |
|
| Q |
102 |
-aaagaaccagtaatgatgagtatcttttcgatatcggaaataacaaaaacaataataatctttgggatgaactttcaaacctttttccaaattcacact |
200 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || | |
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| T |
2497485 |
aaaagaaccggcaatgatgagtatcttttcgatatcggaaataacaaaaacaacaataatctttgggatggactttcaaacctttttccagat------t |
2497578 |
T |
|
| Q |
201 |
caagttcaagtgatgtagtgaaggattttgactttacgatcgatggcgctcggtttggtaatgtggggagatttgttaaccatagttgctcccctaatct |
300 |
Q |
| |
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||||||||||||| |||||| |||||| |||||| || | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2497579 |
caagttcaagtgaagtagtggaggattctgacttcactaccgatgccgctcagtttggtaatgtggggagatttgttaaccatagttgctcccctaatct |
2497678 |
T |
|
| Q |
301 |
atatgctcagaatgtcctttatgatcatcaagacagcagggttcctcacatcatgttatttg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2497679 |
ttatgctcagaatgtcctttatgatcatcaagacagcagggttcctcacatcatgttatttg |
2497740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 4260005 - 4260362
Alignment:
| Q |
5 |
tcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgtgaatatattggagaggttcttgaagaaaaggaagccgaacaaa |
104 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
4260005 |
tcaatgggatggggtgtaagatccttgaattccatcccttctggaagttttatctgtgaatatattggagaggttcttgaggacaaggaagctgaacaaa |
4260104 |
T |
|
| Q |
105 |
gaaccagtaatgatgagtatcttttcgatatcggaaataacaaaaacaataataatctttgggatgaactttcaaacctttttccaaattcacactcaag |
204 |
Q |
| |
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|||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||| |||||||| ||| |||| |||| ||| |
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| T |
4260105 |
gaactggtaatgatgagtatctttttgatattggaaataacaaaaacaacagtaatctttgggatggactttcgaaccttttgccagattcgcacttaag |
4260204 |
T |
|
| Q |
205 |
ttcaagtgatgtagtgaaggattttgactttacgatcgatggcgctcggtttggtaatgtggggagatttgttaaccatagttgctcccctaatctatat |
304 |
Q |
| |
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||||||||| |||||||| ||| ||| ||| || ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |
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| T |
4260205 |
ttcaagtgaagtagtgaatgatgttggcttcactatcgatgccgctcagtttggtaatgtggggagattcattaaccatagttgctcccccaatctctat |
4260304 |
T |
|
| Q |
305 |
gctcagaatgtcctttatgatcatcaagacagcagggttcctcacatcatgttatttg |
362 |
Q |
| |
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|| |||||||||||||||||||| || |||| |||||||||||| |||||||||||| |
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|
| T |
4260305 |
gcccagaatgtcctttatgatcaccatgacaacagggttcctcatgtcatgttatttg |
4260362 |
T |
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