View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_3 (Length: 745)
Name: NF17162_high_3
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 13518276 - 13518996
Alignment:
| Q |
1 |
ctgaatagtgagagaaacattgttttcattgatttttagtactggtgcagcacagtgttctaggtgacataaaagtagaataataagagagacttgttga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518276 |
ctgaatagtgagagaaacattgttttcattgatttgtagtactggtgcagcacagtgttctaggtgacataaaagtagaataataagagagacttgttga |
13518375 |
T |
|
| Q |
101 |
aagaatagtttcttgtttttatagaaaacacaacataattaaagtgtactgctgagtctgatcagatcaaataaatagtactcaagttcagatatttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13518376 |
aagaatagtttcttgtttttatagaaaacacaacataattaaagtgtactgctgagtctgatcagatcaaata----gtactcaagttcagatatttgaa |
13518471 |
T |
|
| Q |
201 |
actaacnnnnnnnnnnnnnn--catgcaaaagggatatagacagaaaaaccattatgattcttgataaacatattaatgcaannnnnnnnnnnnnnnnct |
298 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| | |
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| T |
13518472 |
actaacaaaaaggaaaaaaaaacatgcaaaagggatatatacagaaaaaccattatgattcttgatacacatattgatgcaattttttattttcttttat |
13518571 |
T |
|
| Q |
299 |
aaatttagggggaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttgtgatgcca |
398 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13518572 |
aaatttaggggaaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttgtgatgcca |
13518671 |
T |
|
| Q |
399 |
caatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttgaaagtttta |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13518672 |
caatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttgaaagtttta |
13518771 |
T |
|
| Q |
499 |
gagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaaaggtagtt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13518772 |
gagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaaaggtagtt |
13518871 |
T |
|
| Q |
599 |
gttcagaaatcatattaacttcctctttttcagccatttcgatgcaatttgatgagaccatccttgatccaagatcagaagaagaattactaggaagccc |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13518872 |
gttcagaaatcatattaacttcctctttttcagccatttctatgcaatttgatgagaccatccttgatccaagatcagaagaagaattactaggaagccc |
13518971 |
T |
|
| Q |
699 |
tatttgtagtgcaacagtaacactt |
723 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
13518972 |
tatttgtagtgcaacagtaacactt |
13518996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 13607809 - 13608529
Alignment:
| Q |
1 |
ctgaatagtgagagaaacattgttttcattgatttttagtactggtgcagcacagtgttctaggtgacataaaagtagaataataagagagacttgttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13607809 |
ctgaatagtgagagaaacattgttttcattgatttgtagtactggtgcagcacagtgttctaggtgacataaaagtagaataataagagagacttgttga |
13607908 |
T |
|
| Q |
101 |
aagaatagtttcttgtttttatagaaaacacaacataattaaagtgtactgctgagtctgatcagatcaaataaatagtactcaagttcagatatttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13607909 |
aagaatagtttcttgtttttatagaaaacacaacataattaaagtgtactgctgagtctgatcagatcaaata----gtactcaagttcagatatttgaa |
13608004 |
T |
|
| Q |
201 |
actaacnnnnnnnnnnnnnn--catgcaaaagggatatagacagaaaaaccattatgattcttgataaacatattaatgcaannnnnnnnnnnnnnnnct |
298 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
13608005 |
actaacaaaaaggaaaaaaaaacatgcaaaagggatatatacagaaaaaccattatgattcttgatacacatattgatgcaattttttattttcttttat |
13608104 |
T |
|
| Q |
299 |
aaatttagggggaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttgtgatgcca |
398 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608105 |
aaatttaggggaaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttgtgatgcca |
13608204 |
T |
|
| Q |
399 |
caatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttgaaagtttta |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608205 |
caatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttgaaagtttta |
13608304 |
T |
|
| Q |
499 |
gagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaaaggtagtt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608305 |
gagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaaaggtagtt |
13608404 |
T |
|
| Q |
599 |
gttcagaaatcatattaacttcctctttttcagccatttcgatgcaatttgatgagaccatccttgatccaagatcagaagaagaattactaggaagccc |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608405 |
gttcagaaatcatattaacttcctctttttcagccatttctatgcaatttgatgagaccatccttgatccaagatcagaagaagaattactaggaagccc |
13608504 |
T |
|
| Q |
699 |
tatttgtagtgcaacagtaacactt |
723 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13608505 |
tatttgtagtgcaacagtaacactt |
13608529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 576
Target Start/End: Original strand, 21038367 - 21038468
Alignment:
| Q |
475 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
574 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| ||||| |||||||| || || ||||||||||||||||||| |
|
|
| T |
21038367 |
ttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaatactgacccttgt |
21038466 |
T |
|
| Q |
575 |
ta |
576 |
Q |
| |
|
|| |
|
|
| T |
21038467 |
ta |
21038468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 576
Target Start/End: Complemental strand, 36568561 - 36568460
Alignment:
| Q |
475 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
574 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| || || |||| |
|
|
| T |
36568561 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctttgt |
36568462 |
T |
|
| Q |
575 |
ta |
576 |
Q |
| |
|
|| |
|
|
| T |
36568461 |
ta |
36568460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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