View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_33 (Length: 323)

Name: NF17162_high_33
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_33
NF17162_high_33
[»] chr1 (3 HSPs)
chr1 (13-315)||(42837184-42837486)
chr1 (21-143)||(35598628-35598750)
chr1 (56-181)||(35599177-35599305)
[»] scaffold0368 (1 HSPs)
scaffold0368 (66-315)||(13321-13569)
[»] chr2 (6 HSPs)
chr2 (125-276)||(7390270-7390428)
chr2 (125-276)||(19586684-19586842)
chr2 (60-120)||(19586484-19586544)
chr2 (60-120)||(7390568-7390628)
chr2 (125-168)||(7390508-7390551)
chr2 (125-168)||(19586561-19586604)
[»] chr4 (6 HSPs)
chr4 (125-276)||(11658538-11658696)
chr4 (56-120)||(50234464-50234528)
chr4 (60-120)||(11658215-11658275)
chr4 (125-168)||(11658292-11658335)
chr4 (125-168)||(11658383-11658426)
chr4 (125-162)||(50234545-50234582)
[»] chr3 (1 HSPs)
chr3 (125-276)||(51655408-51655566)
[»] scaffold1463 (1 HSPs)
scaffold1463 (56-120)||(87-151)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 42837184 - 42837486
Alignment:
Q  13 cacagagaaagaaacgaaatacaacaacgaacgatgnnnnnnngaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatca 112  Q
    |||||||||||||||||||||||||||| ||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42837184 cacagagaaagaaacgaaatacaacaactaacaatgaaaaaaagaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatca 42837283  T
Q  113 aaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaatcggtgggagaaagtgagttaccggtga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42837284 aaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaattcacacaatcaatatgaacatgaatcggtgggagaaagtgagttaccggcga 42837383  T
Q  213 cagttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatcatcgaaatcgattttccggcgagatgtgagaagaata 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||    
T  42837384 cacttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatcagagaaattgattttccggtgagatgtgagaagaata 42837483  T
Q  313 acc 315  Q
    |||    
T  42837484 acc 42837486  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 35598750 - 35598628
Alignment:
Q  21 aagaaacgaaatacaacaacgaacgatgnnnnnnngaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||| ||| |||       |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35598750 aagaaacgaaatacaacaactaacaatgaaaaaaagaacaaaaactaatctaacaatgaagaaaaagctatatttcacacaatcacatatcaaaatcaac 35598651  T
Q  121 gattttcaaaccctaatgtcaaa 143  Q
     |||||||||||||| |||||||    
T  35598650 aattttcaaaccctattgtcaaa 35598628  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 35599305 - 35599177
Alignment:
Q  56 gaacaaaaactattctaacaatgaagaaaaagt-tataattcacacaatcacatatcaaaatcaacgattttcaaaccctaatgtcaa--attcgaaatt 152  Q
    |||||||||||| |||||||||  | ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||    
T  35599305 gaacaaaaactaatctaacaatagaaaaaaagactataattcacacaatcacatatcaaaatcaacgattttcaaaccctattgtcaaggattcaaaatt 35599206  T
Q  153 agaaaaatttacacaatcaatatgaacat 181  Q
    |  |||||  |||||||||||||||||||    
T  35599205 atcaaaatgcacacaatcaatatgaacat 35599177  T

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Target: scaffold0368 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 66 - 315
Target Start/End: Complemental strand, 13569 - 13321
Alignment:
Q  66 tattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaatttaca 165  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  13569 tattctaacaatgaagaaaaaagtataattcacacaatcacatatcaaaatcaacgattt-caaaccctaatgtcaaattggaaattagaaaaattcaca 13471  T
Q  166 caatcaatatgaacatgaatcggtgggagaaagtgagttaccggtgacagttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13470 caatcaatatgaacatgaatcggtgggagaaagtgagttaccggcgacacttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatg 13371  T
Q  266 tgcgtggatcatcgaaatcgattttccggcgagatgtgagaagaataacc 315  Q
    |||||||||||  ||||| |||||||||| ||||||||||||||||||||    
T  13370 tgcgtggatcagagaaattgattttccggtgagatgtgagaagaataacc 13321  T

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Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 7390428 - 7390270
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaa-------tcggtgggagaaagtgagttaccggtgacagtt 217  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||    
T  7390428 ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt 7390329  T
Q  218 acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca 276  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7390328 acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca 7390270  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 125 - 276
Target Start/End: Original strand, 19586684 - 19586842
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaaca-------tgaatcggtgggagaaagtgagttaccggtgacagtt 217  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||    
T  19586684 ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt 19586783  T
Q  218 acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca 276  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19586784 acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca 19586842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 19586484 - 19586544
Alignment:
Q  60 aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19586484 aaaaactattctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaac 19586544  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 7390628 - 7390568
Alignment:
Q  60 aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  7390628 aaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac 7390568  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 7390551 - 7390508
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa 168  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||    
T  7390551 ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa 7390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 19586561 - 19586604
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa 168  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||    
T  19586561 ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa 19586604  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 276
Target Start/End: Original strand, 11658538 - 11658696
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaaca-------tgaatcggtgggagaaagtgagttaccggtgacagtt 217  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||       ||||||||| |||||||||||||||||||||||| ||    
T  11658538 ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtaggagaaagtgagttaccggtgacaatt 11658637  T
Q  218 acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca 276  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  11658638 acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca 11658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 50234464 - 50234528
Alignment:
Q  56 gaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50234464 gaacaaaaactattctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaac 50234528  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 11658215 - 11658275
Alignment:
Q  60 aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  11658215 aaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac 11658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 11658292 - 11658335
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa 168  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||    
T  11658292 ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa 11658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 11658383 - 11658426
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa 168  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||    
T  11658383 ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa 11658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 50234545 - 50234582
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaattt 162  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  50234545 ttcataccctaatgtcaaattcgaaattagcaaaattt 50234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 51655566 - 51655408
Alignment:
Q  125 ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaa-------tcggtgggagaaagtgagttaccggtgacagtt 217  Q
    |||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||       |||||||||||||||||||||||||||||| ||    
T  51655566 ttcaaaccctaatgtcaaattcaaaattagcaaaattcacactatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt 51655467  T
Q  218 acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca 276  Q
    |||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||    
T  51655466 acgaaggtcatttgttgttccggcggaaattgcggagtcggcgagatgtgcgtggatca 51655408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 151 - 87
Alignment:
Q  56 gaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac 120  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  151 gaacaaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac 87  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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