View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_34 (Length: 317)
Name: NF17162_high_34
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 22362774 - 22363082
Alignment:
| Q |
9 |
agcacagattgttgattatctcctccaccaatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagttaacataaagtggataa |
108 |
Q |
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| T |
22362774 |
agcacagattgttgattatctcctccaccaatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagataacataaagtggataa |
22362873 |
T |
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| Q |
109 |
tatgtaagtgaaacatgtgaaattatagatgcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctc |
208 |
Q |
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| T |
22362874 |
tatgtgagtgaaacatgtgaaattatagaagcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctc |
22362973 |
T |
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| Q |
209 |
tgaccttcacctatattcactaaataaaatacagtacctgctggaattacatacaaatcccccgtctttattctcctttcctctagttcatctccatata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22362974 |
tgaccttcacctatattcactaaataaaatacagtacctgctggaattacatacaaatcccctgtctttattctcctttcctctagttcatctccatata |
22363073 |
T |
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| Q |
309 |
tgaatccca |
317 |
Q |
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||||||||| |
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| T |
22363074 |
tgaatccca |
22363082 |
T |
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