View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_36 (Length: 304)

Name: NF17162_high_36
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_36
NF17162_high_36
[»] chr4 (4 HSPs)
chr4 (87-267)||(20300787-20300967)
chr4 (212-289)||(20302165-20302242)
chr4 (30-89)||(20300639-20300698)
chr4 (183-257)||(20304819-20304892)
[»] chr5 (15 HSPs)
chr5 (110-289)||(30746623-30746805)
chr5 (110-289)||(30057155-30057338)
chr5 (110-289)||(30679889-30680072)
chr5 (110-289)||(30716067-30716250)
chr5 (180-267)||(30245494-30245580)
chr5 (22-89)||(30679741-30679808)
chr5 (212-289)||(30480783-30480860)
chr5 (182-286)||(30204183-30204287)
chr5 (30-89)||(30715927-30715986)
chr5 (30-89)||(30746886-30746945)
chr5 (37-89)||(30057419-30057471)
chr5 (187-254)||(30210487-30210554)
chr5 (212-289)||(30433309-30433387)
chr5 (87-129)||(30245385-30245427)
chr5 (211-255)||(30201302-30201346)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 87 - 267
Target Start/End: Original strand, 20300787 - 20300967
Alignment:
Q  87 tgctttctcagtttctatgtggaatgtctacgggtaaaattattgtgagaattgggccatatctttagaattgaagctgagcttgataatacaacaaatc 186  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| |||| |||||||||    
T  20300787 tgctttctcagtttttgtgtggaatgtctacgggtaaaattattgtgagaattgggccatatctttagaattgacgctttgcttgttaatgcaacaaatc 20300886  T
Q  187 aaaattcttggttcaagctattagccaggtgtgtatacagttcttcattaggaaggtgtcattgtatttcatgattctagt 267  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  20300887 aaaaatcttggttcaagctattagccaggtgtgtatacagctcttcattaggaaggtgtcattgtatttcatgatgctagt 20300967  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 20302165 - 20302242
Alignment:
Q  212 caggtgtgtatacagttcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  20302165 caggtgtgtatacagctctttattaggaaggtgacattgtatttcatgattctagtcgagtcactcatgttatttcat 20302242  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 20300639 - 20300698
Alignment:
Q  30 aagtatctctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 89  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  20300639 aagtatttctcaagacatttatcttgaagaagatgtatgctagttttatctcttccctgc 20300698  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 20304819 - 20304892
Alignment:
Q  183 aatcaaaattcttggttcaagctattagccaggtgtgtatacagttcttcattaggaaggtgtcattgtatttca 257  Q
    |||||||||||| ||| ||||||||||||||||||||||||||  || | ||||||||||||||||||| |||||    
T  20304819 aatcaaaattctcggtccaagctattagccaggtgtgtatacaactc-taattaggaaggtgtcattgtttttca 20304892  T

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Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 110 - 289
Target Start/End: Complemental strand, 30746805 - 30746623
Alignment:
Q  110 atgtctacgggtaaaattattgtgagaattgggccatatctttagaattgaagctgagcttgataatacaacaaatcaaaattcttggttcaagctatta 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30746805 atgtctacgagtaaaattattgtgagaattgggccatatctttagaattgatgctgagcttgttaatgcaacaaatcaaaattcttggttcaagctatta 30746706  T
Q  210 gccaggtgtgtatacagttcttcattaggaaggtgt-catt--gtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||||| ||||||||||||||||||  |||   |||||||||||||||||||| ||||||||||||||||||    
T  30746705 gccaggtgtgtatacagctcttcattaggaaggtgtgtattagctatttcatgattctagtcgagtcactcatgttatttcat 30746623  T

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Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 110 - 289
Target Start/End: Complemental strand, 30057338 - 30057155
Alignment:
Q  110 atgtctacgggtaaaattattgtgagaattgggccatatctttagaattgaagctgagcttgataatacaacaaatcaaaattcttggttcaagctatta 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30057338 atgtctacgagtaaaattattgtgagaattgggccatatctttagaattgacgctgagcttgttaatgcaacaaatcaaaattcttggttcaagctatta 30057239  T
Q  210 gccaggtgtgtatacagttcttcattaggaaggtgt-catt---gtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||||| ||||||||||||||||||  |||    |||||||||||||||||||| ||||||||||||||||||    
T  30057238 gccaggtgtgtatacagctcttcattaggaaggtgtgtatttagctatttcatgattctagtcgagtcactcatgttatttcat 30057155  T

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Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 110 - 289
Target Start/End: Original strand, 30679889 - 30680072
Alignment:
Q  110 atgtctacgggtaaaattattgtgagaattgggccatatctttagaattgaagctgagcttgataatacaacaaatcaaaattcttggttcaagctatta 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30679889 atgtctacgagtaaaattattgtgagaattgggccatatctttagaattgacgctgagcttgttaatgcaacaaatcaaaattcttggttcaagctatta 30679988  T
Q  210 gccaggtgtgtatacagttcttcattaggaaggtgt-catt---gtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||||| ||||||||||||||||||  |||    |||||||||||||||||||| ||||||||||||||||||    
T  30679989 gccaggtgtgtatacagctcttcattaggaaggtgtgtatttagctatttcatgattctagtcgagtcactcatgttatttcat 30680072  T

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Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 110 - 289
Target Start/End: Original strand, 30716067 - 30716250
Alignment:
Q  110 atgtctacgggtaaaattattgtgagaattgggccatatctttagaattgaagctgagcttgataatacaacaaatcaaaattcttggttcaagctatta 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30716067 atgtctacgagtaaaattattgtgagaattgggccatatctttagaattgacgctgagcttgttaatgcaacaaatcaaaattcttggttcaagctatta 30716166  T
Q  210 gccaggtgtgtatacagttcttcattaggaaggtgt-catt---gtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||||| ||||||||||||||||||  |||    |||||||||||||||||||| ||||||||||||||||||    
T  30716167 gccaggtgtgtatacagctcttcattaggaaggtgtgtatttagctatttcatgattctagtcgagtcactcatgttatttcat 30716250  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 30245494 - 30245580
Alignment:
Q  180 acaaatcaaaattcttggttcaagctattagccaggtgtgtatacagttcttcattaggaaggtgtcattgtatttcatgattctagt 267  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30245494 acaaataaaaattcttggttcatgctattagccaggtgtgtatacagctcttcattaggaaggtgtcattgta-ttcatgattctagt 30245580  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 30679741 - 30679808
Alignment:
Q  22 aacctgtgaagtatctctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 89  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30679741 aacctgtgaagtatttctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 30679808  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 30480860 - 30480783
Alignment:
Q  212 caggtgtgtatacagttcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  30480860 caggtgtgtatacagctctttattaggaaggtgacattgtaattcatgattctagtcgagtcactcatgttatttcat 30480783  T

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Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 30204287 - 30204183
Alignment:
Q  182 aaatcaaaattcttggttcaagctattagccaggtgtgtatacagttcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgt 281  Q
    |||| ||||||||| ||||||||||  || ||||||||||||||| ||||||||||||| ||||  || |||||||||||||||||||| || |||||||    
T  30204287 aaataaaaattcttagttcaagctacaagtcaggtgtgtatacagctcttcattaggaatgtgtagttttatttcatgattctagtcgagtcgctcatgt 30204188  T
Q  282 tattt 286  Q
    |||||    
T  30204187 tattt 30204183  T

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Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 30715927 - 30715986
Alignment:
Q  30 aagtatctctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 89  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715927 aagtatttctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 30715986  T

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Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 30746945 - 30746886
Alignment:
Q  30 aagtatctctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 89  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30746945 aagtatttctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 30746886  T

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Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 30057471 - 30057419
Alignment:
Q  37 tctcaagacagttatctggaagaagatgtatgctagttttatctcttccctgc 89  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30057471 tctcaagacaattatctggaagaagatgtatgctagttttatctcttccctgc 30057419  T

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Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 30210554 - 30210487
Alignment:
Q  187 aaaattcttggttcaagctattagccaggtgtgtatacagttcttcattaggaaggtgtcattgtatt 254  Q
    ||||||||| ||||||||||| | |||||||| ||||||  |||||||||||||||||||||||||||    
T  30210554 aaaattctttgttcaagctataaaccaggtgtttatacaagtcttcattaggaaggtgtcattgtatt 30210487  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 30433387 - 30433309
Alignment:
Q  212 caggtgtgtatacagttcttcattaggaaggtgtcattgtatttca-tgattctagtcgaatcactcatgttatttcat 289  Q
    ||||||||||||||| ||||  |||||| ||||||||||||||||| |  ||||||||||  |||||||||||||||||    
T  30433387 caggtgtgtatacagctctttgttaggatggtgtcattgtatttcattttttctagtcgagacactcatgttatttcat 30433309  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 30245385 - 30245427
Alignment:
Q  87 tgctttctcagtttctatgtggaatgtctacgggtaaaattat 129  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  30245385 tgctttctcagtttctatgtgtaatgtctatgggtaaaattat 30245427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 30201346 - 30201302
Alignment:
Q  211 ccaggtgtgtatacagttcttcattaggaaggtgtcattgtattt 255  Q
    |||||||||||||||  |||| |||||||||||||||||||||||    
T  30201346 ccaggtgtgtatacaactcttaattaggaaggtgtcattgtattt 30201302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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