View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_37 (Length: 304)

Name: NF17162_high_37
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_37
NF17162_high_37
[»] chr5 (8 HSPs)
chr5 (42-285)||(15063189-15063432)
chr5 (42-93)||(5048083-5048134)
chr5 (42-92)||(5046541-5046591)
chr5 (42-92)||(5047312-5047362)
chr5 (210-272)||(5664607-5664669)
chr5 (180-240)||(5047449-5047509)
chr5 (216-272)||(5662999-5663055)
chr5 (180-240)||(5046678-5046738)
[»] chr4 (6 HSPs)
chr4 (48-272)||(28787099-28787323)
chr4 (42-272)||(24853431-24853656)
chr4 (182-272)||(6824820-6824910)
chr4 (42-153)||(51246707-51246818)
chr4 (43-92)||(17525452-17525501)
chr4 (42-152)||(24856322-24856432)
[»] chr2 (1 HSPs)
chr2 (42-123)||(20978765-20978846)
[»] chr1 (1 HSPs)
chr1 (52-252)||(22056353-22056550)
[»] chr3 (2 HSPs)
chr3 (180-268)||(12738423-12738511)
chr3 (47-92)||(12738289-12738334)
[»] scaffold0406 (1 HSPs)
scaffold0406 (42-145)||(6365-6468)
[»] chr7 (1 HSPs)
chr7 (41-148)||(22622282-22622389)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 285
Target Start/End: Original strand, 15063189 - 15063432
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactct 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||    
T  15063189 atgtcaataatattgaaggcttcaccatatcatattctcacctcctacaatatgctcatcactaatgtgcgtcctctagtccgatactactaaccactct 15063288  T
Q  142 accactagctccaactacactataattttactacaatagtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaact 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15063289 accaccagctccaactacactataattttactacaatagtatcagagctgcgttcggtcattaattgggcgtagcaaaatatgacctcttgtcaccaact 15063388  T
Q  242 atatattctacaacatgtattctactatcctccaactacactat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15063389 atatattctacaacatgtattctactatcctccaactacactat 15063432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 5048083 - 5048134
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaata 93  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5048083 atgtcaataatattagaggcttcaccatatcatattctctcctcctacaata 5048134  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 5046541 - 5046591
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaat 92  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5046541 atgtcaataatattagaggcttcaccatatcatattctctcctcctacaat 5046591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 5047312 - 5047362
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaat 92  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5047312 atgtcaataatattagaggcttcaccatatcatattctctcctcctacaat 5047362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 5664669 - 5664607
Alignment:
Q  210 gcgtagcaaaatatgacctcttgtcaccaactatatattctacaacatgtattctactatcct 272  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| ||| ||| |||||||||    
T  5664669 gcgtagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct 5664607  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5047449 - 5047509
Alignment:
Q  180 gtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaac 240  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||| || ||||| ||||    
T  5047449 gtatcagagctgcattcggtcattaactaggcatagcaaaatatgacttcgtgtcatcaac 5047509  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 5663055 - 5662999
Alignment:
Q  216 caaaatatgacctcttgtcaccaactatatattctacaacatgtattctactatcct 272  Q
    |||||||||||||| |||||||||||||||||||| ||| ||| ||| |||||||||    
T  5663055 caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct 5662999  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5046678 - 5046738
Alignment:
Q  180 gtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaac 240  Q
    ||||||||||||| |||| ||||||||| ||| |||||||||||||| || ||||| ||||    
T  5046678 gtatcagagctgcattcgatcattaactaggcatagcaaaatatgacttcgtgtcatcaac 5046738  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 28787099 - 28787323
Alignment:
Q  48 ataatattaaaggcttcacca---tatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactctacc 144  Q
    |||||||| ||||||||||||   ||||||||| || ||||||| |||  | | ||  |||||||| ||||||| || | ||||||||||| ||||||||    
T  28787099 ataatattgaaggcttcaccaccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctacc 28787198  T
Q  145 actagctccaactacactataattttactacaatagtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaactata 244  Q
    | |||||||   ||||||||| |||| | ||| | ||||||||| |||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  28787199 attagctcc---tacactatattttttcaacagtggtatcagagatgcgttcgatcattaactgggcgtaacaaaatatgatctcgtgtcaccaactata 28787295  T
Q  245 tattctacaacatgtattctactatcct 272  Q
    |||||||||||||| |||||||||||||    
T  28787296 tattctacaacatgaattctactatcct 28787323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 272
Target Start/End: Original strand, 24853431 - 24853656
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactct 141  Q
    |||||||||||||| ||||||||| |||||||||||||  |||||||||||  ||| ||  | ||| || ||||||| |||| ||||||||||  ||||     
T  24853431 atgtcaataatattgaaggcttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactcc 24853530  T
Q  142 accactagctccaactacactataattttactacaatagtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaact 241  Q
    |||||||||||   |||||||||| ||||   ||| | ||||||||  || ||||| ||||||||| ||||| ||||||||| ||||| ||||||||||     
T  24853531 accactagctc---ctacactatatttttctaacattggtatcagatttgtgttcgatcattaactaggcgtcgcaaaatataacctcatgtcaccaac- 24853626  T
Q  242 atatattctacaacatgtattctactatcct 272  Q
     ||| ||| |||||||| |||||||||||||    
T  24853627 -tattttccacaacatgaattctactatcct 24853656  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 6824910 - 6824820
Alignment:
Q  182 atcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaactatatattctacaacatgtattctactatcct 272  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  6824910 atcagggctgcgttcagtcattaacagggcgtagcaaaatatgaccttgtgtcaccaactatatattctacaacatgaattctactatcct 6824820  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 51246707 - 51246818
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactct 141  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||| ||  |||||||| ||||||| |||| || |||||||  ||||     
T  51246707 atgtcaataatattgaaggcttcaccaaatcatattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcccatactactaaacactcc 51246806  T
Q  142 accactagctcc 153  Q
    | ||||||||||    
T  51246807 agcactagctcc 51246818  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 17525501 - 17525452
Alignment:
Q  43 tgtcaataatattaaaggcttcaccatatcatattctcacctcctacaat 92  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  17525501 tgtcaataatattgaaggcttcaccatatcatattctctcctcctacaat 17525452  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 24856322 - 24856432
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactct 141  Q
    |||||||||||||| || | ||||||||||||||||||| |||||||||||  ||| ||  | ||| || ||| ||| |||| ||||||||||  ||||     
T  24856322 atgtcaataatattgaaagtttcaccatatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactcc 24856421  T
Q  142 accactagctc 152  Q
    |||||||||||    
T  24856422 accactagctc 24856432  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 20978846 - 20978765
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtcc 123  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||| ||||    
T  20978846 atgtcaataatattgaaggcttcaccatatcatattctctcctcctacaatatgcttatcactaatgtgtgtcctcttgtcc 20978765  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 252
Target Start/End: Complemental strand, 22056550 - 22056353
Alignment:
Q  52 tattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactctaccactagct 151  Q
    |||| ||||||||||||||| |||||||| |||| ||||||  | | ||  | ||| || ||||||| |||| ||||||||||||| ||||||| | |||    
T  22056550 tattgaaggcttcaccatattatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggct 22056451  T
Q  152 ccaactacactataattttactacaatagtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaactatatattcta 251  Q
    ||   ||||||||| |||| | ||||| ||||||||||| ||||| | |||| | ||| | ||||||||||  |||   |||||||||||||||||||||    
T  22056450 cc---tacactatatttttccaacaatggtatcagagcttcgttccgccattcagtggacatagcaaaatacaaccatgtgtcaccaactatatattcta 22056354  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 12738423 - 12738511
Alignment:
Q  180 gtatcagagctgcgttcggtcattaactgggcgtagcaaaatatgacctcttgtcaccaactatatattctacaacatgtattctacta 268  Q
    ||||||||||||||||| ||||||||   ||||||||||||||| | ||  |||| ||||||| || |||||||||||| |||||||||    
T  12738423 gtatcagagctgcgttcagtcattaataaggcgtagcaaaatattaacttgtgtcgccaactacatgttctacaacatgaattctacta 12738511  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 12738289 - 12738334
Alignment:
Q  47 aataatattaaaggcttcaccatatcatattctcacctcctacaat 92  Q
    ||||||||| |||||||||||| |||||||||||  ||||||||||    
T  12738289 aataatattgaaggcttcaccaaatcatattctcttctcctacaat 12738334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 6365 - 6468
Alignment:
Q  42 atgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactct 141  Q
    |||||||||||||| |||||||||| | |||||||| || ||||||| |||  ||| ||  |||||||| ||| ||| |||| ||||||||||| |||||    
T  6365 atgtcaataatattgaaggcttcacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaaccactct 6464  T
Q  142 acca 145  Q
    ||||    
T  6465 acca 6468  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 22622389 - 22622282
Alignment:
Q  41 catgtcaataatattaaaggcttcaccatatcatattctcacctcctacaatatgctcatcgctaatgtgcgtcctctggtccgatgctactaacaactc 140  Q
    |||||||||||||||  |||| | ||||| |||||||||  ||||||| |||  ||| ||    ||| || ||||||| |||| ||||||||||||||||    
T  22622389 catgtcaataatattgtaggcattaccatttcatattctttcctcctagaatgagctaatttacaatatgtgtcctcttgtccaatgctactaacaactc 22622290  T
Q  141 taccacta 148  Q
    ||||||||    
T  22622289 taccacta 22622282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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