View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_38 (Length: 304)
Name: NF17162_high_38
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 4259363 - 4259085
Alignment:
| Q |
18 |
tatggcccccagaattcactttatttggggattgaaaagcgcaccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaag |
117 |
Q |
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| T |
4259363 |
tatggcccccggaattcactttatttggggattgaaaagcgcaccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaag |
4259264 |
T |
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| Q |
118 |
ttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259263 |
ttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttata |
4259164 |
T |
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| Q |
218 |
aacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttgataattataaagtattat |
296 |
Q |
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| T |
4259163 |
aacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttgataattataaagtattat |
4259085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 4262985 - 4262707
Alignment:
| Q |
18 |
tatggcccccagaattcactttatttggggattgaaaagcgcaccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaag |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262985 |
tatggcccccggaattcactttatttggggattgaaaagcgcaccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaag |
4262886 |
T |
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| Q |
118 |
ttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262885 |
ttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttata |
4262786 |
T |
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| Q |
218 |
aacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttgataattataaagtattat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262785 |
aacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttgataattataaagtattat |
4262707 |
T |
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