View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_high_4 (Length: 686)
Name: NF17162_high_4
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 143 - 676
Target Start/End: Complemental strand, 49997654 - 49997121
Alignment:
| Q |
143 |
aatatattatgaagaaaaacaacgtttttgaatttatgcttagttttgagcagactttgagaaaatatagaaacaatgagctgatggctgataacaagtc |
242 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49997654 |
aatatattatgaagaaaatcagcgtttttgaatttatgcttagttttgagcagactttgagaaaatatagaaacaatgagctgatggctgataacaagtc |
49997555 |
T |
|
| Q |
243 |
tttatattcagaacctgtgttgaccacgtctcttcaagagtttgagaatgatgctgcaaaaatttacacaacagagatttttaaggaagttaaagagcag |
342 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49997554 |
tttatattcagaacctgtgttgaccaagtctcttcaagagtttgagaatgattctgcaaaaatttacacaacagagatttttaaggaagttaaagagcag |
49997455 |
T |
|
| Q |
343 |
attgcattggctggtgcattaaatgttattaagcgaatggtaaatgggaagaaggttatcttcaagctaaccaagtattgccatcccagtattgaaacaa |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
49997454 |
attgcattggctggtgcattaaatgttattaagcgaatggtaaatgggaagaaggttatcttcaagctaatcaagtattgccatcccaatattgaaacaa |
49997355 |
T |
|
| Q |
443 |
aagttgtttatgatacttctaagtcaacattttattgtgtgtgtagacattttgagtcttgtggcattcagtgttcgcatatttttcgtgcaatgatctt |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49997354 |
aagttgtttatgatacttctaagtcaacattttattgtgtgtgtagacattttgagtctcgtggcattccgtgttcgcatatttttcgtgcaatgatctt |
49997255 |
T |
|
| Q |
543 |
tgagcatgtggatcatattccaagcagtttggttttgacacggtggactaagaatgctaagattgctttactgtcatcgaatttgatggatggaatgaac |
642 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49997254 |
tgagcatgtggatcatattccaagcaatttggttttgacacggtggactaagaatgctaagattgctttactgtcatcgaatttgatggatggaatgaac |
49997155 |
T |
|
| Q |
643 |
tatgatgtagagttcgctcagtttgcagcctatg |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
49997154 |
tatgatgtagagttcgctcagtttgcagcctatg |
49997121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 49998102 - 49997970
Alignment:
| Q |
19 |
aatgaatgggtttctagaacctatgagaataggtcattgtgggccaatgcatacctccgtgataagttttttggttgtatataaactacgtgtcattgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49998102 |
aatgaatgggtttctagaacctatgagaataggtcattgtgggccaatgcatacctccgtgataagttttttggttgtatataaactacgtgtcattgtg |
49998003 |
T |
|
| Q |
119 |
aagctattaattcaatcatcacggaatatatta |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49998002 |
aagctattaattcaatcatcacggaatatatta |
49997970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 125 - 501
Target Start/End: Original strand, 24803154 - 24803526
Alignment:
| Q |
125 |
ttaattcaatcatcacggaatatattatgaagaaaaacaacgtttttgaatttatgcttagttttgagca-gactttgagaaaatatagaaacaatgagc |
223 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24803154 |
ttaattcaatcatcaccgagtatattatgaagaaaatcaatgttttggaatttatgcttagttttgagcaagactttgagaaaatatagaaacaatgagc |
24803253 |
T |
|
| Q |
224 |
tgatggctgataacaagtctttatattcagaacctgtgttgaccacgtctcttcaagagtttgagaatgatgctgcaaaaatttacacaacagagatttt |
323 |
Q |
| |
|
|||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24803254 |
tgatggctcacaacaagtctttgtattcaaaacctgtgttgaccacgtctcttcaagagtttgagaatgatgctgcaaaaatttacacaacagagatttt |
24803353 |
T |
|
| Q |
324 |
taaggaagttaaagagcagattgcattggctggtgcattaaatgttattaagcgaatggtaaatgggaagaaggttatcttcaagctaaccaagtattgc |
423 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24803354 |
taa---agttaaagagcagattgtattggttggtgcattaaatgttattaagcgaatggtaaatgggaagaaggttatcttcaagctaaccaagtattgt |
24803450 |
T |
|
| Q |
424 |
catcccagtattgaaacaaaagttgtttatgatacttctaagtcaacattttattgtgtgtgtagacattttgagtct |
501 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24803451 |
catcccaatattgaaacaaaagttgtttatgatacttctaagtcaacattttat--tgtgtgtagacattttgagtct |
24803526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 125 - 482
Target Start/End: Complemental strand, 52658615 - 52658261
Alignment:
| Q |
125 |
ttaattcaatcatcacggaatatattatgaagaaaaacaacgtttttgaatttatgcttagttttgagc-agactttgagaaaatatagaaacaatgagc |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
52658615 |
ttaattcaatcatcaccgaatatattatgaagaaaatcaatgttttggaatttatgcttagttttgagccaaactttgagaaaatatagaaacaatgagt |
52658516 |
T |
|
| Q |
224 |
tgatggctgataacaagtctttatattcagaacctgtgttgaccacgtctcttcaagagtttgagaatgatgctgcaaaaatttacacaacagagatttt |
323 |
Q |
| |
|
|||||||| ||||||||||||| |||| | || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52658515 |
tgatggctcataacaagtctttgtatttaaaatctgtgttgacc-catctcttcaagagtttgagaatgatgctgcaaaaatttacacaacagagatttt |
52658417 |
T |
|
| Q |
324 |
taaggaagttaaagagcagattgcattggctggtgcattaaatgttattaagcgaatggtaaatgggaagaaggttatcttcaagctaaccaagtattgc |
423 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52658416 |
taa---agttaaagagcagattgtattggctggtgcattaaacgttattaagcgaatggtaaatgggtagaaggttatcttcaagctaaccaagtattgc |
52658320 |
T |
|
| Q |
424 |
catcccagtattgaaacaaaagttgtttatgatacttctaagtcaacattttattgtgt |
482 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52658319 |
catcccaatattgaaacaaaagttgtttatgatacttctaagtcaacattttattgtgt |
52658261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 25518220 - 25518166
Alignment:
| Q |
284 |
ttgagaatgatgctgcaaaaatttacacaacagagatttttaaggaagttaaaga |
338 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
25518220 |
ttgagattgatgctgccaaaatttacacagcagagatctttaaagaagttaaaga |
25518166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 19720281 - 19720335
Alignment:
| Q |
284 |
ttgagaatgatgctgcaaaaatttacacaacagagatttttaaggaagttaaaga |
338 |
Q |
| |
|
|||||| ||||||||| | |||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19720281 |
ttgagattgatgctgccagaatttacacagcagagatctttaaagaagttaaaga |
19720335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University