View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_42 (Length: 277)
Name: NF17162_high_42
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 4020502 - 4020231
Alignment:
| Q |
1 |
tttttagtcaagaaagagatagaaaagattgagagaaactgagggagaatttaaagagaggaatcaaactcatccacccaccattattnnnnnnngaagt |
100 |
Q |
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| T |
4020502 |
tttttagtcaagaaagagatagaaaagattgagagaaactgagggagaatttaaagagaggaatcaaacttattcacccaccattattaaaaaaagaagt |
4020403 |
T |
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| Q |
101 |
tattaatattttaatatatttaaatttaaaggaaagtgcatgtaacatggttcatacagatattttcagcatgtaaactgtttggaaagtcaacgtttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4020402 |
tattaatattttaatatatttaaatttaaaggaaagtgcatgcaacatggttcatacagatattttcagcatgtaaactgtttggaaagtcaaagtttcc |
4020303 |
T |
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| Q |
201 |
cctgccatgcaatggtttaactattttatatttttgtatttaaataatggtttttaacaaatccaatgctct |
272 |
Q |
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| T |
4020302 |
cctgccatgcaatggtttaactattttatatttttgtatttaaataatggtttttaacaaatccaatgctct |
4020231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3960811 - 3961045
Alignment:
| Q |
1 |
tttttagtcaagaaagagatagaaaagattgagagaaactgagggagaatttaaa-gagaggaatcaaactcatccacccaccattattnnnnnnng--a |
97 |
Q |
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|||| |||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| || |||||||||| | | |
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| T |
3960811 |
ttttcagtcaagagtgagatagaaaagattgagaaaa--tgagggagaatttaaaagagaggaatcaaactcattcaatcaccattattaaagaaaggaa |
3960908 |
T |
|
| Q |
98 |
agttattaatattttaatatatttaaatttaaaggaaagtgcatgtaacatggttcatacagatattttcagcatgtaaactgtttggaaagtcaacgtt |
197 |
Q |
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| T |
3960909 |
agttacaaatattttaatatatttaaatttaaaggaaagtgcaagtcacttggttcatacggataacttcaacatgtatactgtttggcaagtcaacgtt |
3961008 |
T |
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| Q |
198 |
tcccct-gccatgcaatggtttaactattttatattt |
233 |
Q |
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| T |
3961009 |
tcccctagccatgcaatggtttaactattttatattt |
3961045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 4005811 - 4005668
Alignment:
| Q |
97 |
aagttattaatattttaatatatttaaatttaaaggaaagtgcatgtaacatggttcatacagatattttcagcat-------gtaaactgtttggaaag |
189 |
Q |
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| T |
4005811 |
aagttattaatattttaacatatttaaatttaaaggaaagtgcatgtcacgtcattcatacagataatccaaacatgtatacagtatactgtttgacaag |
4005712 |
T |
|
| Q |
190 |
tcaacgtttcccctgccatgcaatggtttaactattttatattt |
233 |
Q |
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| T |
4005711 |
tcaacgttccccctgccttgcaattgtttaactattttatattt |
4005668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 4221423 - 4221379
Alignment:
| Q |
96 |
gaagttattaatattttaatatatttaaatttaaaggaaagtgca |
140 |
Q |
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| T |
4221423 |
gaagttattaatattttaatatatttaaatttaaaggaaagtgca |
4221379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 3822944 - 3822909
Alignment:
| Q |
105 |
aatattttaatatatttaaatttaaaggaaagtgca |
140 |
Q |
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| T |
3822944 |
aatattttaatatatttaaatttagaggaaagtgca |
3822909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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