View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_46 (Length: 256)
Name: NF17162_high_46
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 9269548 - 9269742
Alignment:
| Q |
51 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
150 |
Q |
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| T |
9269548 |
tttaacaaatcaagtcaccgaatatgttattatttcataagctccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
9269647 |
T |
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| Q |
151 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
245 |
Q |
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| T |
9269648 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
9269742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 10854473 - 10854280
Alignment:
| Q |
51 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
150 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
10854473 |
tttaacaaatcaagtcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
10854374 |
T |
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| Q |
151 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctc |
244 |
Q |
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| T |
10854373 |
aataagagattcatgagatatagttatcaatatgtttgtgaatatggaatatggaatattgtatgtagttagattagtttatttgcaatgtctc |
10854280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 23733683 - 23733639
Alignment:
| Q |
161 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
205 |
Q |
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| T |
23733683 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23733639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 23740875 - 23740831
Alignment:
| Q |
161 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
205 |
Q |
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| T |
23740875 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23740831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 23617025 - 23616982
Alignment:
| Q |
162 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
205 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23617025 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23616982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 23648366 - 23648323
Alignment:
| Q |
162 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
205 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23648366 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23648323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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