View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_5 (Length: 654)

Name: NF17162_high_5
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_5
NF17162_high_5
[»] chr5 (1 HSPs)
chr5 (9-635)||(3851771-3852393)


Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 9 - 635
Target Start/End: Original strand, 3851771 - 3852393
Alignment:
Q  9 gagcacagaaatggaattggaatatttcagtccttacaaacgtgaaaaaactgtttgatggtcggtcagtcaggtccacaaccaaatccccaacacacac 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  3851771 gagcacataaatggaattggaatatttcagtccttacaaacgtgaaaaaactgtttgatggtcggtcagtcaggtccacaaacaaatccccaacacagac 3851870  T
Q  109 atttttgcattgcaagtttgaaggcatctagtaagtgcttgtttggttacaagcttaaataaaatgaattataatatgaattttgatgtatgtgataata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3851871 atttttgcattgcaagtttgaaggcatctagtaagtgcttgtttggttacaagcttaaataaaatgaattataatatgaattttgatgtatgtgataata 3851970  T
Q  209 tctttaggcttgtgacaaaggaagtatattgcttctagttggttagttactttgagaagagaagagaagccaaattaagtacaatgaagagaagccaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3851971 tctttaggcttgtgacaaaggaagtatattgcttctagttggttagttactttgagaagagaagagaagccaaattaagtacaatgaagagaagccaaat 3852070  T
Q  309 taaatgccaccatacatcatcatactatacagttggtgaaaacatatatcataagttatgctactgataaagataatac-aatgcttttacctagctact 407  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3852071 taaatgccaccata---catcatactatacagttggtgaaaacatatatcataagttatgctactgataaagataatacaaatgcttttacctagctact 3852167  T
Q  408 ttaaaac--nnnnnnnntaataatcatatactaactttacccaaatgtcataaagtaagaaaacaactactcaaatatatagtgatatccaattatccat 505  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3852168 ttaaaacaaaaaaaaaataataatcatatactaactttacccaaatgtcataaagtaagaaaacaactactcaaatatatagtgatatccaattatccat 3852267  T
Q  506 accacaccatcatcgtggtctggtctagcgcgatgtgtgtgagtgttgtaaactctaatgtaccgagttggattagtactcctaaaagaacttatagctt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3852268 accacaccatcatcgtggtctggtctagcgcgatgtgtgtgagtgttgtaaactctaatgtaccaagttggattagtactcctaaaagaacttatagctt 3852367  T
Q  606 agttaggcatcgatcagaaagaacactagg 635  Q
    ||||||||    ||||||||||||||||||    
T  3852368 agttaggc----atcagaaagaacactagg 3852393  T

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