View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_55 (Length: 245)
Name: NF17162_high_55
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10402540 - 10402309
Alignment:
| Q |
1 |
ccttgattgttgtgctcccaattgtttcagtgatactcttctttgttggctgctatttgccaaagagaaaagcaagaaagagttttagggctattctcag |
100 |
Q |
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| T |
10402540 |
ccttgattgttgtgctcccaattgtttcagtgatactcttctttgttggctgctatttgccaaagagaaaagcaagaaagagttttagggctattctcag |
10402441 |
T |
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| Q |
101 |
agaaaattgtatgttgcaattgcaaacatgaaaaataatatcaaacccttgttttaatttaaagcttaaagtttgaaaccttgatttaacaatttaatca |
200 |
Q |
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| T |
10402440 |
agaaaattgtatgttgcaattgcaaacatgaaaaataatatcaaacccttgttttaatttaaagcttaaagtttgaaaccttgatttaacaatttaatca |
10402341 |
T |
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| Q |
201 |
tttttatctagttggtcatgaaggtgcaactt |
232 |
Q |
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| T |
10402340 |
tttttatctagttggtcatgaaggtgcaactt |
10402309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 20232428 - 20232646
Alignment:
| Q |
4 |
tgattgttgtgctcccaattgtttcagtgatactcttctttgttggctgctatttgccaaagagaaaagcaagaaagagttttagggctattctcagaga |
103 |
Q |
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| T |
20232428 |
tgattgttgtggtcacatttattccagtgatactcttgtttgttggatgctatttgctaaagagaagagcaagaaagagttttagaactattctcagaga |
20232527 |
T |
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| Q |
104 |
aaattgtatgttgcaattgcaaacatgaaaaata-atatcaaacccttgttttaatttaaagcttaaagtttgaaaccttgatttaacaatttaatcatt |
202 |
Q |
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| T |
20232528 |
aaactgtaagt----attggaaacaggaaaaaaatatatcaaacccttact----ttcaaatattaaagtttgaaaacttggtttaacaatttaatcttt |
20232619 |
T |
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| Q |
203 |
tttatctagttggtcatgaaggtgcaa |
229 |
Q |
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| T |
20232620 |
ttgatccagttggtcatgaaagtgcaa |
20232646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 22126412 - 22126630
Alignment:
| Q |
4 |
tgattgttgtgctcccaattgtttcagtgatactcttctttgttggctgctatttgccaaagagaaaagcaagaaagagttttagggctattctcagaga |
103 |
Q |
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||||||||||| || || || || ||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |
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| T |
22126412 |
tgattgttgtggtcacatttattccagtgatactcttgtttgttggatgctatttgctaaagagaagagcaagaaagagttttagaactattctcagaga |
22126511 |
T |
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| Q |
104 |
aaattgtatgttgcaattgcaaacatgaaaaata-atatcaaacccttgttttaatttaaagcttaaagtttgaaaccttgatttaacaatttaatcatt |
202 |
Q |
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| T |
22126512 |
aaactgtaagt----attggaaacaggaaaaaaatatatcaaacccttact----ttcaaatattaaagtttgaaaacttggtttaacaatttaatcttt |
22126603 |
T |
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| Q |
203 |
tttatctagttggtcatgaaggtgcaa |
229 |
Q |
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|| ||| ||||||||||||| |||||| |
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| T |
22126604 |
ttgatccagttggtcatgaaagtgcaa |
22126630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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