View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_high_58 (Length: 233)

Name: NF17162_high_58
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_high_58
NF17162_high_58
[»] chr3 (12 HSPs)
chr3 (109-220)||(23322172-23322283)
chr3 (109-153)||(21221370-21221414)
chr3 (109-153)||(50678829-50678873)
chr3 (109-153)||(54622806-54622850)
chr3 (109-153)||(1344717-1344761)
chr3 (109-153)||(19906793-19906837)
chr3 (109-153)||(21373961-21374005)
chr3 (109-153)||(25860431-25860475)
chr3 (109-153)||(28675821-28675865)
chr3 (109-153)||(29584906-29584950)
chr3 (109-153)||(38213385-38213429)
chr3 (109-153)||(39052848-39052892)
[»] chr8 (10 HSPs)
chr8 (109-153)||(6386606-6386650)
chr8 (111-153)||(37618423-37618465)
chr8 (109-154)||(14005074-14005119)
chr8 (109-153)||(7394845-7394889)
chr8 (109-153)||(8673086-8673130)
chr8 (109-153)||(10320308-10320352)
chr8 (109-153)||(10656717-10656761)
chr8 (109-153)||(29563257-29563301)
chr8 (109-153)||(32303616-32303660)
chr8 (109-153)||(37602973-37603017)
[»] chr7 (6 HSPs)
chr7 (109-153)||(32873786-32873830)
chr7 (109-153)||(35645481-35645525)
chr7 (109-153)||(43189259-43189303)
chr7 (116-153)||(17237117-17237154)
chr7 (109-153)||(1870169-1870213)
chr7 (109-153)||(21784905-21784949)
[»] chr6 (7 HSPs)
chr6 (109-153)||(3259713-3259757)
chr6 (109-153)||(10324166-10324210)
chr6 (109-153)||(11279158-11279202)
chr6 (109-153)||(11382094-11382138)
chr6 (109-153)||(166978-167022)
chr6 (113-153)||(7396180-7396220)
chr6 (109-153)||(15277335-15277379)
[»] chr4 (11 HSPs)
chr4 (109-153)||(7554966-7555010)
chr4 (109-153)||(49152109-49152153)
chr4 (109-148)||(12600919-12600958)
chr4 (109-155)||(50729549-50729595)
chr4 (109-153)||(21202772-21202816)
chr4 (109-153)||(23521913-23521957)
chr4 (109-153)||(24210352-24210396)
chr4 (109-153)||(38812553-38812597)
chr4 (109-153)||(50186561-50186605)
chr4 (109-153)||(55065342-55065386)
chr4 (109-153)||(55593918-55593962)
[»] chr2 (9 HSPs)
chr2 (109-153)||(12939316-12939360)
chr2 (109-153)||(44284659-44284703)
chr2 (109-148)||(16177904-16177943)
chr2 (109-153)||(7258927-7258971)
chr2 (109-153)||(7761589-7761633)
chr2 (109-153)||(9732946-9732990)
chr2 (109-153)||(10399886-10399930)
chr2 (109-153)||(28824573-28824617)
chr2 (109-153)||(40832485-40832529)
[»] chr1 (9 HSPs)
chr1 (113-149)||(34283911-34283947)
chr1 (109-148)||(41967945-41967984)
chr1 (109-153)||(1351526-1351570)
chr1 (109-153)||(6029392-6029436)
chr1 (109-153)||(13994166-13994210)
chr1 (109-153)||(16437401-16437445)
chr1 (109-153)||(31004171-31004215)
chr1 (109-153)||(45490966-45491010)
chr1 (109-153)||(50382494-50382538)
[»] scaffold0027 (1 HSPs)
scaffold0027 (109-148)||(15202-15241)
[»] scaffold0650 (1 HSPs)
scaffold0650 (109-153)||(1665-1709)
[»] scaffold0169 (2 HSPs)
scaffold0169 (109-153)||(12558-12602)
scaffold0169 (109-153)||(18076-18120)
[»] chr5 (8 HSPs)
chr5 (109-153)||(553427-553471)
chr5 (113-153)||(700623-700663)
chr5 (109-153)||(7208252-7208296)
chr5 (109-153)||(24036260-24036304)
chr5 (109-153)||(31770613-31770657)
chr5 (109-153)||(32528745-32528789)
chr5 (109-153)||(39918537-39918581)
chr5 (109-153)||(41790484-41790528)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 23322172 - 23322283
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtgatatcttctcgaattctaggaacaatgtattagaatttgggtctgttattcataaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23322172 agacaacttgtacgagagataaaaagttgtgttgtggtttagtgatatcttctcgaattctaggaacaatgtattagaatttgggtctgttattcataaa 23322271  T
Q  209 tatagagaaact 220  Q
    ||||||||||||    
T  23322272 tatagagaaact 23322283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 21221414 - 21221370
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  21221414 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 21221370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 50678829 - 50678873
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  50678829 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 50678873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 54622850 - 54622806
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  54622850 agacaacttgtacgtgggataaaaagttgtgttgtggtttcgtga 54622806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 1344761 - 1344717
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  1344761 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 1344717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 19906793 - 19906837
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  19906793 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 19906837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 21373961 - 21374005
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  21373961 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 21374005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 25860475 - 25860431
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  25860475 agacaacttgtacgtgagacaaaaagttgtgatgtggtttggtga 25860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 28675821 - 28675865
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  28675821 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 28675865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 29584906 - 29584950
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  29584906 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 29584950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 38213385 - 38213429
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  38213385 agacaacttgtacgtgggacaaaaagttgtgttgtggtttcgtga 38213429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 39052892 - 39052848
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  39052892 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 39052848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 6386606 - 6386650
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  6386606 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 6386650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 37618465 - 37618423
Alignment:
Q  111 acaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||| |||| |||||||||||||||||||| ||||    
T  37618465 acaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 37618423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 14005119 - 14005074
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtgat 154  Q
    |||||||||||||| | || |||||||||||||||||||| |||||    
T  14005119 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgat 14005074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 7394889 - 7394845
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||||| |||||| ||||    
T  7394889 agacaacttgtacgtgagacaaaaagttgtgttatggtttggtga 7394845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 8673130 - 8673086
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  8673130 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 8673086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 10320352 - 10320308
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||    
T  10320352 agacaacttgtacgtgtggtaaaaagttgtgttgtggtttggtga 10320308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 10656761 - 10656717
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||| ||||||| |||| |||||||||||||||||||| ||||    
T  10656761 agacaatttgtacgtgagacaaaaagttgtgttgtggttttgtga 10656717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 29563301 - 29563257
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  29563301 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 29563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 32303660 - 32303616
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  32303660 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 32303616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 37603017 - 37602973
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    ||||||||| || | ||||||||||||||||||| ||||||||||    
T  37603017 agacaacttatatgtgagataaaaagttgtgttgcggtttagtga 37602973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 32873830 - 32873786
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  32873830 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 32873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 35645481 - 35645525
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  35645481 agacaacttgtacgtacgataaaaagttgtgttgtggtttagtga 35645525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 43189303 - 43189259
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  43189303 agacaacttgtacgtgggataaaaagttgtgttgtggtttggtga 43189259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 17237117 - 17237154
Alignment:
Q  116 ttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  17237117 ttgtacgtgagacaaaaagttgtgttgtggtttagtga 17237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 1870169 - 1870213
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  1870169 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 1870213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 21784905 - 21784949
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  21784905 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 21784949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 3259713 - 3259757
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  3259713 agacaacttgtacgtgggataaaaagttgtgttgtggtttggtga 3259757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 10324210 - 10324166
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  10324210 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 10324166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 11279158 - 11279202
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  11279158 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 11279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 11382094 - 11382138
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||    
T  11382094 agacaacttgtacgtgagacaaaaagttgtgttgtggtttggtga 11382138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 167022 - 166978
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  167022 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 166978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 7396220 - 7396180
Alignment:
Q  113 aacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||| |||| |||||||||||| ||||||||||||    
T  7396220 aacttgtacgtgagacaaaaagttgtgtagtggtttagtga 7396180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 15277379 - 15277335
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | |||||||||||||| |||||||| ||||    
T  15277379 agacaacttgtacgtgggataaaaagttgtgatgtggtttggtga 15277335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 7555010 - 7554966
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||    
T  7555010 agacaacttgtacgtgagacaaaaagttgtgttatggtttagtga 7554966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 49152153 - 49152109
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  49152153 agacaacttgtacgtgggataaaaagttgtgttgtggtttggtga 49152109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 12600919 - 12600958
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggttt 148  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  12600919 agacaacttgtacgtgagacaaaaagttgtgttgtggttt 12600958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 50729595 - 50729549
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtgata 155  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  50729595 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgata 50729549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 21202772 - 21202816
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  21202772 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 21202816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 23521913 - 23521957
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  23521913 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 23521957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 24210352 - 24210396
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | |||||||||||||| |||||||| ||||    
T  24210352 agacaacttgtacgtgggataaaaagttgtgctgtggtttggtga 24210396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 38812553 - 38812597
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  38812553 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 38812597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 50186561 - 50186605
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||| | | ||||||||||||||||||||||| ||||    
T  50186561 agacaacttgtatgtgggataaaaagttgtgttgtggtttggtga 50186605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 55065386 - 55065342
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  55065386 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 55065342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 55593918 - 55593962
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | |||||||||||||| |||||||| ||||    
T  55593918 agacaacttgtacgtgggataaaaagttgtgctgtggtttggtga 55593962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 12939360 - 12939316
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||    
T  12939360 agacaacttgtacgtgagataaaaagttgtgctgtggtttggtga 12939316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 44284659 - 44284703
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||    
T  44284659 agacaacttgtacgtgagacaaaaagttgtgctgtggtttagtga 44284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 16177943 - 16177904
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggttt 148  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  16177943 agacaacttgtacgtgagacaaaaagttgtgttgtggttt 16177904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 7258927 - 7258971
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  7258927 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 7258971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 7761633 - 7761589
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  7761633 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 7761589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 9732990 - 9732946
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  9732990 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 9732946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 10399930 - 10399886
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    ||||||||| |||  |||| |||||||||||||||||||||||||    
T  10399930 agacaacttatacatgagacaaaaagttgtgttgtggtttagtga 10399886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 28824617 - 28824573
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||| ||| |||||||||||||||| |||||||| ||||    
T  28824617 agacaacttgcacgtgagataaaaagttgtgatgtggtttggtga 28824573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 40832529 - 40832485
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||| ||||||||| |||| |||||||||||||||||||| ||||    
T  40832529 agactacttgtacgtgagacaaaaagttgtgttgtggtttggtga 40832485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 34283947 - 34283911
Alignment:
Q  113 aacttgtacgagagataaaaagttgtgttgtggttta 149  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34283947 aacttgtacgtgagataaaaagttgtgttgtggttta 34283911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 41967984 - 41967945
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggttt 148  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  41967984 agacaacttgtacgtgagacaaaaagttgtgttgtggttt 41967945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 1351570 - 1351526
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  1351570 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 1351526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 6029436 - 6029392
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  6029436 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 6029392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 13994210 - 13994166
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||  |||| |||||||||||||||||||| ||||    
T  13994210 agacaacttgtacatgagacaaaaagttgtgttgtggtttggtga 13994166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 16437401 - 16437445
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  16437401 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 16437445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 31004171 - 31004215
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  31004171 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 31004215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 45491010 - 45490966
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  45491010 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 45490966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 50382538 - 50382494
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  50382538 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 50382494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 15202 - 15241
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggttt 148  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  15202 agacaacttgtacgtgagacaaaaagttgtgttgtggttt 15241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 1709 - 1665
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  1709 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 1665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 12602 - 12558
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  12602 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 12558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 18120 - 18076
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  18120 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 18076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 553427 - 553471
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  553427 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 553471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 700663 - 700623
Alignment:
Q  113 aacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  700663 aacttgtacgtgagacaaaaagttgtgttgtggtttggtga 700623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 7208296 - 7208252
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  7208296 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 7208252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 24036260 - 24036304
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | |||||||||||||| |||||||| ||||    
T  24036260 agacaacttgtacgtgggataaaaagttgtgatgtggtttggtga 24036304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 31770657 - 31770613
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  31770657 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 31770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 32528745 - 32528789
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| | || |||||||||||||||||||| ||||    
T  32528745 agacaacttgtacgtgggacaaaaagttgtgttgtggtttggtga 32528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 39918537 - 39918581
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||||||||||| |||| ||||||||||| |||||||| ||||    
T  39918537 agacaacttgtacgtgagacaaaaagttgtgctgtggtttggtga 39918581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 41790528 - 41790484
Alignment:
Q  109 agacaacttgtacgagagataaaaagttgtgttgtggtttagtga 153  Q
    |||||| ||||||| |||| |||||||||||||||||||| ||||    
T  41790528 agacaatttgtacgtgagacaaaaagttgtgttgtggtttggtga 41790484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University